Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00378 atggctttgGAGGCTCTCAATTCTCCTACGGCAGCTACCACTCCTTTCGCCACCGCCTATCAACGCGATGAGCCCGACCTTGACCTTGACGTTCACTGCCGTGAGCCATGGGCTAAAGGGAAGCGCTCTAAACGACCTCGTTTCGACAACCCCTCAACAGAAGAAGAGTACCTTGCTCTCTGCCTCATCATGCTCGCCCAAAGCGGCAACAACACCGAGACCGCCACCGCCCGGCTTAATCAAATGGAGACAAAGCCTCGCGGACAAGGACAACCAACGCCGCCGCCTATCAAGCTGTCTTATAGATGTACAGTTTGTAACAAAGCTTTTTCATCCTATCAAGCACTTGGCGGCCACAAAGCCAGCCACCGCAAATCCTCCTCGGGAGCCGCCGCTGACACCAACACCAACACCGACAACGCCTCTGCCTCCGCTTCCACCGCCACCGCCACCAGTGGCAGGATGCACGAGTGTTCTATCTGTCACAAGACTTTTCCTACTGGTCAAGCCCTTGGCGGCCACAAACGGTGCCACTACGATGGCGGCAACAGCAAAGACAACGGTAACAACAGCAGCGGTTTAACTTTCTCCGAAGGCGGTACCTCCGCCCACAGCAACCGTGGCTTTGACCTGAACCTTCCCGCCCCGTTGACTGACATCTGGTCCACGGGGTTCGGCGGCGAGCAAGAGGTGGAAAGCCCACTGCCGGTAGCCACCAAGAAACCGCGTTTGTTTTTGGATGAAGAAAACGTGGCTtcgcaagaaaagaaagccgATTA 779 0.543 MALEALNSPTAATTPFATAYQRDEPDLDLDVHCREPWAKGKRSKRPRFDNPSTEEEYLALCLIMLAQSGNNTETATARLNQMETKPRGQGQPTPPPIKLSYRCTVCNKAFSSYQALGGHKASHRKSSSGAAADTNTNTDNASASASTATATSGRMHECSICHKTFPTGQALGGHKRCHYDGGNSKDNGNNSSGLTFSEGGTSAHSNRGFDLNLPAPLTDIWSTGFGGEQEVESPLPVATKKPRLFLDEENVASQEKKAD 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00378 259 MobiDBLite consensus disorder prediction 120 148 - -
Bva13g00378 259 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 249 IPR044653 GO:0003700
Bva13g00378 259 PANTHER ZINC FINGER PROTEIN ZAT10 1 249 - -
Bva13g00378 259 MobiDBLite consensus disorder prediction 127 148 - -
Bva13g00378 259 SMART c2h2final6 101 123 IPR013087 -
Bva13g00378 259 SMART c2h2final6 156 178 IPR013087 -
Bva13g00378 259 Gene3D Classic Zinc Finger 98 178 - -
Bva13g00378 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Bva13g00378 259 Pfam C2H2-type zinc finger 156 180 - -
Bva13g00378 259 Pfam C2H2-type zinc finger 101 125 - -
Bva13g00378 259 MobiDBLite consensus disorder prediction 1 21 - -
Bva13g00378 259 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Bva13g00378 259 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Bva13g00378 259 SUPERFAMILY beta-beta-alpha zinc fingers 101 178 IPR036236 -
Bva13g00378 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 178 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00378 Bva-Chr13 1760047 1761083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00378 1 244 C2H2 Transcription Factor Family AT1G27730 45.276 6.08e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva13g00378 zf-C2H2_6 1.7e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00378 13 1760047 1761083 Bva13g00378 13 1760047 1761083 ECH
Bva13g00378 13 1760047 1761083 Bva14g00471 14 2265342 2266353 ECH
Bva06g02145 06 14131734 14132929 Bva13g00378 13 1760047 1761083 ECH
Bva10g00653 10 5627324 5628435 Bva13g00378 13 1760047 1761083 ECH