Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00314 ATGGCTCAGGTTCAAGTTCAACAGCAAAATGCGATACCAGGTGCCAACGGTGCTGCGTCAACTGGCGGCGGAAACCAGTTTGTGACCACATCGCTCTACGTTGGAGATCTTGACATTAACGTTACGGATTCGCAGCTGTACGACCTGTTTAACCAAGTTGGTCAGGTCGTATCTGTTAGGGTTTGCAGGGATTTGACCAGTCGGAGATCACTTGGTTATGGTTATGTCAATTACAGCAACCCGCAGGATGCTGCCAGGGCATTGGATGTGCTGAACTTCACCCCTCTCAATGGAAAGCACATTCGTATTATGTATTCCCATCGTGATCCCAGCATTCGGAAAAGTGGGGCAGGGAATATATTCATCAAGAATTTGGACAAGGCAATTGATCACAAAGCATTGCATGACACCTTCTCGGCATTTGGTCATATTCTTTCTTGCAAGGTAGCTACGGATTCTTCTGGCCAATCAAGGGGCTATGGCTTTGTACAATTTGATAATGAAGAGTCTGCTCAGAAAGCCATAGAGAAGTTAAATGGTATGTTGTTGAATGATAAGCAAGTATATGTGGGACCTTTCCTTCGCAAGCAGGAGAGAGAAAGTTCTACTGACAAGGCAAAGTTCAATAATGTTTTTGTAAAGAACCTGTCAGAATCAACCACTGATGAAGATTTGAAGAACATTTTTGGTGAATTTGGAGCAATTACTAGTGCTGTTGTGATGAGAGATGGGGAAGGAAAATCAAAGTGTTTTGGATTTGTAAACTTTGAGAGCACTGATGATGCTGCTAGGGCTGTTGAGGCTcttaatgggaaaaaaattgatgacaaGGAATGGTATGTTGGTAAAGCTCAGAAGAAATCTGAAAGGGAACTAGAATTGAAACTTAAATTTGAGCAGAGCATGAAAGAGGCAGCAGATAAATATCAAGGTGCTAACTTGTATGTTAAAAACTTAGACGATAACATTGGTGATGATAAACTTAAGGATCTCTTTTCCCCTTTTGGTACCATTACGTCATGCAAGGTAATGAGAGACCCCAATGGAATAAGTCGAGGATCAGGTTTTGTTGCATTCTCAACTCCTGAGGAAGCATCTAGAGCTcttTTGGAAATGAACGGGAAAATGGTCGTGAGCAAGCCTCTATATGTTGCTCTTGCACAGAGGAAAGAAGATAGAAGAGCTAGACTGCAGGctcaattttctcaaatgCGGCCTGTGGCAATGGCACCATCAGTTGCTCCCCGTGTGCCCATCTACCCCCCTGGTGGTCCAGGTATTGGACAGCAAATATTTTATGGTCAGGCCCCTCCTGCTATCATTCCTTCTCAGCCTGGATTTGGGTATCAGCAGCAACTTGTACCAGGCATCAGGCCTGGTGGGGCTCCTATGCCAAACTTTTTTGTTCCGATGGTTCAGCAGGGTCAGCAGGGTCAGCGTCCTGGTGGCAGACGAGCAGGGGCAGTCCAGCAGACCCAGCAGCCAGTTCCACTCATGCAGCAGCAGATGCTTCCAAGGGGACGCGTCTATCGTTATCCCCCTGGTAGGGGTCTGCCTGATGTTCCCATGCCTGGGGTCGCTGGAGGCATGTTCTCTGTACCATATGATGTTGGTGGAATGCCATTACGTGATGCATCAATGTCCCAGCAAATCCCGATTGGGGCTTTGGCTTCTGCCCTGGCAAATGCAACTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCTCTTGTGGAACAGTTGGAGCCTGATAATGCGGCTAAAGTGACAGGCATGCTTCTTGAGATGGATCAGACTGAGGTTCTGCACTTGCTCGAGTCACCAGAAGCTCTAAAAGCAAAAGTGGCCGAGGCAATCGATGTGCTTAGGAATGTTGCTCAACAGCAGCAGGCTGGAGGTGCTGCTGATCAACTCACCTCCTTATCACTCAATGACAATCTTGTTTCTTG 1955 0.4588 MAQVQVQQQNAIPGANGAASTGGGNQFVTTSLYVGDLDINVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKHIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGHILSCKVATDSSGQSRGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESSTDKAKFNNVFVKNLSESTTDEDLKNIFGEFGAITSAVVMRDGEGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSERELELKLKFEQSMKEAADKYQGANLYVKNLDDNIGDDKLKDLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVAPRVPIYPPGGPGIGQQIFYGQAPPAIIPSQPGFGYQQQLVPGIRPGGAPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDVGGMPLRDASMSQQIPIGALASALANATPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAIDVLRNVAQQQQAGGAADQLTSLSLNDNLVS 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00314 651 CDD RRM2_I_PABPs 116 192 IPR045305 -
Bva13g00314 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Bva13g00314 651 SUPERFAMILY RNA-binding domain, RBD 209 393 IPR035979 GO:0003676
Bva13g00314 651 SMART rrm1_1 119 191 IPR000504 GO:0003723
Bva13g00314 651 SMART rrm1_1 31 104 IPR000504 GO:0003723
Bva13g00314 651 SMART rrm1_1 313 385 IPR000504 GO:0003723
Bva13g00314 651 SMART rrm1_1 210 282 IPR000504 GO:0003723
Bva13g00314 651 Gene3D - 193 294 IPR012677 -
Bva13g00314 651 Gene3D - 1 117 IPR012677 -
Bva13g00314 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Bva13g00314 651 Gene3D - 118 191 IPR012677 -
Bva13g00314 651 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 31 625 IPR006515 GO:0003723
Bva13g00314 651 CDD RRM1_I_PABPs 31 110 - -
Bva13g00314 651 Gene3D - 295 398 IPR012677 -
Bva13g00314 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Bva13g00314 651 SUPERFAMILY PABC (PABP) domain 493 644 IPR036053 GO:0003723
Bva13g00314 651 SMART poly_2 564 627 IPR002004 GO:0003723
Bva13g00314 651 CDD RRM3_I_PABPs 208 287 - -
Bva13g00314 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Bva13g00314 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Bva13g00314 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Bva13g00314 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Bva13g00314 651 SMART rrm2_1 31 104 IPR003954 GO:0003676
Bva13g00314 651 SMART rrm2_1 313 385 IPR003954 GO:0003676
Bva13g00314 651 SMART rrm2_1 119 191 IPR003954 GO:0003676
Bva13g00314 651 SMART rrm2_1 210 282 IPR003954 GO:0003676
Bva13g00314 651 PANTHER POLYADENYLATE-BINDING PROTEIN 19 634 - -
Bva13g00314 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Bva13g00314 651 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Bva13g00314 651 Gene3D - 548 631 - -
Bva13g00314 651 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Bva13g00314 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723
Bva13g00314 651 PANTHER RNA BINDING PROTEIN 19 634 - -
Bva13g00314 651 CDD RRM4_I_PABPs 311 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00314 Bva-Chr13 1484295 1488491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00314 29 650 Eukaryotic Initiation Factors Gene Family AT1G49760 75.513 0.0 922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00314 13 1484295 1488491 Bva13g00314 13 1484295 1488491 ECH
Bva13g00314 13 1484295 1488491 Bva14g00392 14 1947184 1952341 ECH
Bva10g00700 10 5835185 5839284 Bva13g00314 13 1484295 1488491 ECH