LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva13g00308	ATGCATGGTCAGAGAAGGACTATTGGGTCCTTCCCAGGAATTGTTAGTATGATGCAGGGGCCTAGTTCTAGTGGCTCTGATATGAATCAGCAGTCTTCCTTGAGTCACATTCAAAACACAGTAGATAACCGGTTGCCAAATTATATGGGGTCATCTGGGGAGACTACATGTTTATGTACTACTGGCCCTGATGTTCCGAGCTTCAGCAGCTGGAATAACGATCAACCTAGTTCTACATTGAATCTGCACAACCAAGTCAACGATGATGGACTGAAAACAGAACATGACCGGTCTTCTCTATGCAGTTCTCAATCTGAGGATAATATCAGAACAGAAGAAAGGCAGTTTGAAACAAACAATGTAATTTTTCCTGTTAGGTCAAATACTAATTTACATGGGAATCAATCCACAATTGAGCCTTTCTCTTTGCAAGTTTCCAGCTCCAATCATGTTGCCCAGAATCTGAATCTAAATATGGGCCACATTGCCAACACTGCTAATCGAGGAAAGGGCACAGAAAGTGGTAGTGGTGTTAATATCCACAATGCTAATGGGTTAAATATAGAGCAGACATCATTTGGCAGTGCATTGCGTGATCATGTAGGAACTTCATCGGGAAGCTCTGGTCATGTGGGTAGGGGAGATAATGCAAGTTCAAGTTCTTCTTTAGCAAATTGTGGTTCTTTGTGCAAGAGAAAGGCCCTTGAAGGTACTTCTGAGCAATTGTGTATGGGAGGAAGTTCAAGCTCTCTTCTTGATGCTGAACATGGTTTCTGGAATACAGATCTCACTGATCTTAATGCCTCTAGCAATCTAAGTGTTTCTACCTCTTCAGAGGATATTCCTATTACTAGTCATCCAGCACATCAGAACTCAAGAAATGAGGTGAGGCAAGTGGCTTCGGATGCATTCTCTTTGGTTAGTGTTGTGGGAAATGTTGAAAGGCCTCCGAGAAATTCTGATAGGATGATAAACCATGTACAACGTCAGGAGGCTGTACCTTTCAATTTATCATCAAATGGAAGTGCCGGGCATCCTAACCATTATTCTCCTCATCAAATATCTAGCTCTAACCCATTTAATGATTCTTTGGAGTTGAGGTTAACAGCTGGAGTAACTGCTGCCAATTCCACTTCTCCTCAAAGCCAGTCACATGCCTTTCAAGTACCTGGTTTGTCAGGGAACTTGAATAATTTTCCTTGGAATGGAGCTGCTAATCCAAGGGGCAGCAGCTTATCAACTTCTTATAATCATGGGGAAAGAGCAGTACGAGAAGGATTGAACTTAAGAATCTCCCCAAGAGACAGTACTGAGCACCCTATGCTAATGCCTGCATCTTCAGGGCATGACCCTACAAGTTGGCATATGTCCTCTGGTAACATGAACAATTCTGGAGGTGTACCACCAGCATCTTGGATTGGATCTAGTTCAAGCATCCATTCTTTACCTAATCCCAGCTGGATTGTTCCTCATGAAGTCTCAACAGAGAATCTGCAAAGATTAGAGTTCAGCCCTTGGTCCTTTTTTCCATCAATTGGCTCTGCATCTGGTGTTCATAATGACCATTCTGCCTCATCCTCTTCTGGGCCCTCCTCCTATACTCATGATTCTAGCAACCATCAACCATATCCAAGATCAGCGGCATTTCTGGACAGAAGGGGTGATGATGTTTTCGCCACTCCACATTCATTGCGAGCTTTAGGTTTCGACATTGACGGGAGGCGGCGACTAATATCTCAGATACGTCAAGTCTTGAGTGCAATGCGTAGGGGCGAGAACTTACGAGCTGAGGATTATTTGGTCTTTGACCCTTTCATATTTCATGGTATGGCTGAAATGCACGACAGACACAGGGACATGCGTCTTGATGTTGATAACATGTCTTATgagGAGTTATTAGCGTTGGAGGAGCACATAGGGGATGTGAACACTGGATTAAGTGAGGATATCATTATGAAGGTGATGAAACAGCGAATCTATGTGTCTCTGATGACAGATTGTTCTACAGATCTAGAACCCTGCTGTATCTGTCAGGAGGAGTATGCTGATGGAGAGGATATTGGTTCACTCGATTGTGGGCATGAATTCCACACAAATTGCATCAAGCAGTGGCTAAGACGGAAGAATCTGTGCCCTGTTTGTAAAACAACAGCCTTGGCTACATG	2165	0.4337	MHGQRRTIGSFPGIVSMMQGPSSSGSDMNQQSSLSHIQNTVDNRLPNYMGSSGETTCLCTTGPDVPSFSSWNNDQPSSTLNLHNQVNDDGLKTEHDRSSLCSSQSEDNIRTEERQFETNNVIFPVRSNTNLHGNQSTIEPFSLQVSSSNHVAQNLNLNMGHIANTANRGKGTESGSGVNIHNANGLNIEQTSFGSALRDHVGTSSGSSGHVGRGDNASSSSSLANCGSLCKRKALEGTSEQLCMGGSSSSLLDAEHGFWNTDLTDLNASSNLSVSTSSEDIPITSHPAHQNSRNEVRQVASDAFSLVSVVGNVERPPRNSDRMINHVQRQEAVPFNLSSNGSAGHPNHYSPHQISSSNPFNDSLELRLTAGVTAANSTSPQSQSHAFQVPGLSGNLNNFPWNGAANPRGSSLSTSYNHGERAVREGLNLRISPRDSTEHPMLMPASSGHDPTSWHMSSGNMNNSGGVPPASWIGSSSSIHSLPNPSWIVPHEVSTENLQRLEFSPWSFFPSIGSASGVHNDHSASSSSGPSSYTHDSSNHQPYPRSAAFLDRRGDDVFATPHSLRALGFDIDGRRRLISQIRQVLSAMRRGENLRAEDYLVFDPFIFHGMAEMHDRHRDMRLDVDNMSYEELLALEEHIGDVNTGLSEDIIMKVMKQRIYVSLMTDCSTDLEPCCICQEEYADGEDIGSLDCGHEFHTNCIKQWLRRKNLCPVCKTTALAT	721

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva13g00308	721	MobiDBLite	consensus disorder prediction	336	361	-	-
	Bva13g00308	721	SUPERFAMILY	RING/U-box	673	718	-	-
	Bva13g00308	721	MobiDBLite	consensus disorder prediction	88	114	-	-
	Bva13g00308	721	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	2	721	IPR045191	GO:0061630
	Bva13g00308	721	MobiDBLite	consensus disorder prediction	70	87	-	-
	Bva13g00308	721	MobiDBLite	consensus disorder prediction	70	115	-	-
	Bva13g00308	721	Pfam	Ring finger domain	674	715	IPR001841	-
	Bva13g00308	721	MobiDBLite	consensus disorder prediction	434	453	-	-
	Bva13g00308	721	PANTHER	ZINC FINGER PROTEIN, PUTATIVE-RELATED	2	721	-	-
	Bva13g00308	721	MobiDBLite	consensus disorder prediction	517	546	-	-
	Bva13g00308	721	CDD	RING-H2_TTC3	673	715	-	-
	Bva13g00308	721	ProSiteProfiles	Zinc finger RING-type profile.	674	715	IPR001841	-
	Bva13g00308	721	MobiDBLite	consensus disorder prediction	272	293	-	-
	Bva13g00308	721	MobiDBLite	consensus disorder prediction	517	544	-	-
	Bva13g00308	721	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	637	719	IPR013083	-
	Bva13g00308	721	MobiDBLite	consensus disorder prediction	197	221	-	-
	Bva13g00308	721	SMART	ring_2	674	714	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva13g00308	Bva-Chr13	1453197	1458374	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva13g00308	18	721	C3H Transcription Factor Family	AT2G15530	35.081	1.20e-113	357

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva13g00308	13	1453197	1458374	Bva13g00308	13	1453197	1458374	ECH
	Bva13g00308	13	1453197	1458374	Bva14g00386	14	1920363	1925687	ECH
	Bva06g02103	06	13933045	13937932	Bva13g00308	13	1453197	1458374	ECH
	Bva10g00704	10	5848824	5854137	Bva13g00308	13	1453197	1458374	ECH