Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02104 ATGCCAAATCAAAAGCCCATTTTGCAGAGCACTTTCCTCTTGTTGCTTTTGCAGGTTTTGATTAATGTAGCTCTTGTGAGCTGTAAATCTACAATTGAGCCTTGCTCAAACTCTGATTCCTGTAATGCTCTCTTGGGCTACACTCTTTACACTGACCTAAAGGTCTCTGAGGTCGCTGCTCTCTTCCAAGTCGACCCTGTTTCTCTTCTCACCGCCAATGCAATTGACATTTCGTACCCCGACGTGGAGCACCACATTCTCCCTTCCCAACTCTTCCTCAAAATCCCCATCACCTGTTCATGTGTTGATGGAATCCGCAAATCAGTGTCGACCAAGTACAAAACTCGCCCCTCTGATACTCTCTCTTCGATTGCTGATTCAATATATGGGGGTTTGGTGTCTGCTGACCAAATTAGAGAGGCGAATTCGATAGCTGACCCTTCAGTGCTTGATGTGGGTCAGAATCTTGTGGTGCCGCTTCCATGCACCTGCTTCAATGGGACTGATAACTCTTTGCCTGCAATATACTTGTCATATGTTGTGCAGCCTATTGATACTCTGGCTGCAATTGCCGCGAGGTATTCCACTACTCTAACTGACTTGATGAATGTCAATGCCATGGGGAGCACGGCTATCAGTGATGGTGATATTCTCGCTATTCCAATTCCGGCTTGTGCATCAAACTTCCCAAAATATGCTTCTGATTATGGCTTGCTTGTCCCTAATGGAAGTTATGCTATTACAGCGGGTCACTGTGTGCAATGCAGCTGTGGGCCAGGAAATCTAAATTTGTACTGTATGCCTGCTTCTCTGGCGGTTTCTTGTTCTAGCATGCAGTGTAAAAACAGCAACGTTATGCTTGGGAATGTTACTGCGCAACAGAGTAGTGCTGGTTGCAATGTTTCTTCTTGTGCATATGATGGTATTGTTAATGGCACCATAATAACAACATTGTCTGTGTCGCTTCGACCTCGATGCCCAGGGCCGCAGCAATTCCCTCCACTTGTAGCCCCACCTACTTCTGTTCCAAGGGAATCAATATTTGCACCAGCACCATCACCTCTGTCAGGAGCTGGTACCTCAACCCCAAGATCGATTGTGCCAGCAACAGGGTCATTTCCTGGATTCCCACCTGCAAATGGCCCTATTAGTAGTGGGTTGGCTTCTGGTGCTTCTGATGCTTGCTCCTTGGTTAATCCATTACCCACTTTAATGGCTGCACTTGTGTTATTGTTTATCAAGTTGATGATCCCTGTGGCATTGTA 1265 0.4632 MPNQKPILQSTFLLLLLQVLINVALVSCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVAALFQVDPVSLLTANAIDISYPDVEHHILPSQLFLKIPITCSCVDGIRKSVSTKYKTRPSDTLSSIADSIYGGLVSADQIREANSIADPSVLDVGQNLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLAAIAARYSTTLTDLMNVNAMGSTAISDGDILAIPIPACASNFPKYASDYGLLVPNGSYAITAGHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNVMLGNVTAQQSSAGCNVSSCAYDGIVNGTIITTLSVSLRPRCPGPQQFPPLVAPPTSVPRESIFAPAPSPLSGAGTSTPRSIVPATGSFPGFPPANGPISSGLASGASDACSLVNPLPTLMAALVLLFIKLMIPVAL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02104 421 CDD LysM 178 220 IPR018392 -
Bva12g02104 421 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 5 399 - -
Bva12g02104 421 Pfam LysM domain 113 159 IPR018392 -
Bva12g02104 421 Pfam LysM domain 179 221 IPR018392 -
Bva12g02104 421 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Bva12g02104 421 SUPERFAMILY LysM domain 112 160 IPR036779 -
Bva12g02104 421 SUPERFAMILY LysM domain 177 222 IPR036779 -
Bva12g02104 421 SMART LysM_2 178 221 IPR018392 -
Bva12g02104 421 SMART LysM_2 112 159 IPR018392 -
Bva12g02104 421 CDD LysM 113 158 IPR018392 -
Bva12g02104 421 Gene3D LysM domain 107 168 IPR036779 -
Bva12g02104 421 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 5 399 - -
Bva12g02104 421 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Bva12g02104 421 Gene3D LysM domain 169 229 IPR036779 -
Bva12g02104 421 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02104 Bva-Chr12 16396184 16399119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02104 4 385 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 72.021 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02104 - - gmx:100808966 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02104 12 16396184 16399119 Bva12g02104 12 16396184 16399119 ECH