Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02002 ATGTTGCATCCACATTACAGTAGTGGCCACGACCAGATGCTGCAGTTTCCTGCCGCTCCGACGCCACTGCCGATGGACCGAAGGTGGAAACCCAACATTGAGCTTGCTCCCAGTTGCCCGCGATGTGCTTCTTCCAACACTAAATTCTGTTACTACAACAACTACAGTTTATCACAGCCCAGATACTTTTGTAAAGGCTGTAGAAGGTACTGGACCAAAGGCGGCTCTCTGCGCAACGTCCCCGTCGGCGGTGGTACGCGCAAAAACCGCCGCGGGAAGGCGGTGAGGCACCCGCAAAATCATACTCGAAGCTTCGCTGGAAATTCGGGTTCTGAGGATAAAGAGTCGGTGGCTGACAAACCCAACCGTGAAGCTTGCGATATTGACATGGCCCTCGTGTTCGCTAAGTTTTTGAATCAAAATCATGCCTCTGCTCAAGAATTGGACAATGGCTCTTCCTCCTCCAATTCTCTTACGCCGGAAAGCGTTGAAAGTACCGAGCACGATGTCGTACTTGTGGAGTCGCAGAATCACTTTGATCATTATCCCATGGCCATTGCAGAAGAATTACTTCCGCAACAAGATCAGACTAGGATTCAGAATTTTGGTGGGGACGAATTGAATGGGATTGAGATGCAGGGATTGTTGGACGTGGGCTGTGGGGATGAGGTGGCCCACGATGTTTTCTGGTCCGATCATGCTACGACGTCGTCTCTGGCTAACTGGCAATCTCCAACCCCAACGATGCAAGTGCAAGATTTGGACTATTCGTTGCCCTTCCACGAATACGATGAGGTTCTTCAATTACCAtttacttcttcttcaatcAACCAAGTTAATGATGGCTCGAGTTGGAGTTCCTTCGACCTCTCAACATTGGAAGTCTTCGCGAGacctta 899 0.4894 MLHPHYSSGHDQMLQFPAAPTPLPMDRRWKPNIELAPSCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGTRKNRRGKAVRHPQNHTRSFAGNSGSEDKESVADKPNREACDIDMALVFAKFLNQNHASAQELDNGSSSSNSLTPESVESTEHDVVLVESQNHFDHYPMAIAEELLPQQDQTRIQNFGGDELNGIEMQGLLDVGCGDEVAHDVFWSDHATTSSLANWQSPTPTMQVQDLDYSLPFHEYDEVLQLPFTSSSINQVNDGSSWSSFDLSTLEVFARP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02002 299 MobiDBLite consensus disorder prediction 78 120 - -
Bva12g02002 299 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Bva12g02002 299 Pfam Dof domain, zinc finger 38 91 IPR003851 GO:0003677|GO:0006355
Bva12g02002 299 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Bva12g02002 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 265 IPR045174 GO:0003700|GO:0006355
Bva12g02002 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 16 265 - -
Bva12g02002 299 MobiDBLite consensus disorder prediction 145 167 - -
Bva12g02002 299 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02002 Bva-Chr12 15824963 15826078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02002 29 215 C2C2-Dof Transcription Factor Family AT3G52440 44.041 4.16e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva12g02002 zf-Dof 7.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02002 - - vra:106778892 248.825