Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01922 ATGGACACAACCCAGTGGGCACAGGGGATTGGAGTGGTTAAACCTATGGAAGGTTCAAAGCCTTCTATGTTGGAGAGAAGAGCAAGGCCTCAGAAAGATCAAGCTTTGAACTGCCCAAGAAGGTATTGGACTGAAGGTGGGTCTTTGAGAAATGTTCCTGTGGGTGGAGGTTCGAGAAAGAACAAGAGATCATCAACACCTTCAATATCACAAGCAGCTCCACCATCAGCAAAGAAGCTTCCTGATCTGACAGCACCAAATTTTCCTCAATCTACTTCTCATCAAAACCCAAAGATCCATCAAGGCCAAGATCTTAACTTAGCATACCCACCAGCTGAGGACTACAACACCATATCTAAATTCATTGAGCTTCCTTATAGTGCTGAAGACAAGAGTCATCACCACATTCAAAATCCCAGTTCCTCATCAGCACCTTCTGATCAGTTGTCTGCTatggagcttctcaaaactGGGATTGCTTCATCAAGGGGTTTGAATTCTTTCATGCCCATGTCAGTGTCAGATTCCAGCACAATGTATAATTCAACTGGGTTTTCTTTGCAAGACTTCAAGCCAAGTCTTAACTTTACTCTTGAGGGGTTTGAAAATGGATATGGGGGTATTCAGGGAATTCAAGAGGGCACTGGTGCAAGGATCTTGTTCCCTGTTGAGGATTTGAAGCAGGTTCCAAGTACTACTGAGTTTGAGCAGAATAGAAGCCAGGCAGATTCAACTGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTA 773 0.4321 MDTTQWAQGIGVVKPMEGSKPSMLERRARPQKDQALNCPRRYWTEGGSLRNVPVGGGSRKNKRSSTPSISQAAPPSAKKLPDLTAPNFPQSTSHQNPKIHQGQDLNLAYPPAEDYNTISKFIELPYSAEDKSHHHIQNPSSSSAPSDQLSAMELLKTGIASSRGLNSFMPMSVSDSSTMYNSTGFSLQDFKPSLNFTLEGFENGYGGIQGIQEGTGARILFPVEDLKQVPSTTEFEQNRSQADSTGYWNGMLGGGSW 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01922 257 Pfam Dof domain, zinc finger 38 63 IPR003851 GO:0003677|GO:0006355
Bva12g01922 257 MobiDBLite consensus disorder prediction 58 73 - -
Bva12g01922 257 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 40 - -
Bva12g01922 257 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 254 IPR045174 GO:0003700|GO:0006355
Bva12g01922 257 MobiDBLite consensus disorder prediction 1 102 - -
Bva12g01922 257 MobiDBLite consensus disorder prediction 20 34 - -
Bva12g01922 257 MobiDBLite consensus disorder prediction 85 102 - -
Bva12g01922 257 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 40 IPR045174 GO:0003700|GO:0006355
Bva12g01922 257 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 40 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01922 Bva-Chr12 15335757 15337921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01922 22 257 C2C2-Dof Transcription Factor Family AT3G61850 38.516 1.32e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva12g01922 zf-Dof 6.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01922 - - qlo:115960401 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01922 12 15335757 15337921 Bva06g02999 06 18670090 18672292 ECH
Bva02g02069 02 21493772 21496180 Bva12g01922 12 15335757 15337921 ECH
Bva08g01948 08 13078505 13080418 Bva12g01922 12 15335757 15337921 ECH
Bva12g01922 12 15335757 15337921 Bva12g01922 12 15335757 15337921 ECH