Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01290 ATGGCCGGCGGCCAAGACGATCAGGGGATTAAGCTTTTCGGCGCAACAATAACGTTGCATGGTAGAAGAGTAAACGAGGATAAGAAAGGTAGTCAAGCCGATGATCGGACGGTGGAGAAGAGGCCAGATAAGATCATACCATGTCCCAGATGCAAGAGCATGgagacaaaattttgttacttcAACAATTACAACGTTAATCAGCCAAGGCATTTCTGTAAGGGCTGCCAGAGGTACTGGACAGCTGGTGGGGCCCTCCGGAATGTTCCGGTTGGTGCCGGCCGGCGTAAGGCCAAACCGCCTAATCGTGGGGAGGCCGGATTCTCGGAGGGAGTTCTCTACGAAGCATCGGATGTTCACCAATTTGGGTTGGACCAAGGGTCGTTGGTGGTGGACGAGTGGCATGTTGCCATGGCACAAAGTGATCTCCGGCAGCTATTTCCGGTGAAACGGCGAAAGACCAGCTCAGGTGGTCAACCTACCTA 485 0.5155 MAGGQDDQGIKLFGATITLHGRRVNEDKKGSQADDRTVEKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPNRGEAGFSEGVLYEASDVHQFGLDQGSLVVDEWHVAMAQSDLRQLFPVKRRKTSSGGQPT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01290 161 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 4 157 - -
Bva12g01290 161 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Bva12g01290 161 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Bva12g01290 161 MobiDBLite consensus disorder prediction 21 40 - -
Bva12g01290 161 Pfam Dof domain, zinc finger 44 99 IPR003851 GO:0003677|GO:0006355
Bva12g01290 161 PANTHER CYCLIC DOF FACTOR 2 4 157 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01290 Bva-Chr12 11770621 11771213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01290 5 159 C2C2-Dof Transcription Factor Family AT1G29160 58.382 8.30e-62 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva12g01290 zf-Dof 3.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01290 - - tcc:18596691 228.794