Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01678 ATGATCCAAGAAATGTTAGGAAGTGCTGGCCTTATACCAGCTGGAGAAAGGAAATTCTCCATTAACGGAGGGGTTTTAGCTACTTCCACACCATCTCCTAATTCTCTCCATTCTTCTCCATGTCCAGCTTCTTCCACCACTAATGGTTCCACTACTAGCACCACTACCACTACTGCTGCCACTGCCACCTCGTCCAATTCAGATAACCAGAATCTGAGGTGCCCGCGTTGCGATTCATCCAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCATTTCTGCAAGACATGTCGCCGGTACTGGACAAAAGGAGGTGCTCTGAGGAACGTTCCAATCGGAGGTGGTTGCCGGAAAAACAAGAACATCGGCATCTCAAATGCCGCAGCAAAGGCGAGTGTGGCTAAGATGAAAACGGCTGCATCCGAGCTTGGAAGGTCAGGACTTGGGGGTGGGTTTGATCATGAGCTTCCATCAAGTCCAGTTCTATGGGGCTCGCCACAAAATTCTCATCTGTTAGCTTTGCTGAGAGCTGGCCAGAAccaaaaccctaaccctagcAGTAGCCCGCTGTCCAATGGTGTTGCGCTGAAGGAAGAAGGGCACTTGATAGGTACCCACATGGTGACAGAGCCATTGCTTGCAAATGGGATATTAAATGCTCGAACCCTAGGTTTTGATCCTATTGGACAAGTTCCTTCTCTTGGTTTGTGCAGCTCTTTCTGGAGAAACAATCAAGATCAACCTCAACGACAGAATGGTAACTTTATGCTTGGTGAACATCAAAACAGTGGGATTCAGGAACTCTACCAGAGACTCAGGTCATCATCAGCTAACTATTGTGGAGAAAACTCAACAATGATTATGGGCAACGTGGCTTCGTCATCTTCCTCGTCTTTATCCTTATTGGAGCCAGTTGCAGTTGCTGCTGGTGAATTGGGGTACTGGAATCCAACCCTTTCGTGGTCTGATCTTCCCACAACCAATGGTGCATATCCATA 1013 0.4669 MIQEMLGSAGLIPAGERKFSINGGVLATSTPSPNSLHSSPCPASSTTNGSTTSTTTTTAATATSSNSDNQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGISNAAAKASVAKMKTAASELGRSGLGGGFDHELPSSPVLWGSPQNSHLLALLRAGQNQNPNPSSSPLSNGVALKEEGHLIGTHMVTEPLLANGILNARTLGFDPIGQVPSLGLCSSFWRNNQDQPQRQNGNFMLGEHQNSGIQELYQRLRSSSANYCGENSTMIMGNVASSSSSSLSLLEPVAVAAGELGYWNPTLSWSDLPTTNGAYP 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01678 337 MobiDBLite consensus disorder prediction 30 72 - -
Bva11g01678 337 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Bva11g01678 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 335 IPR045174 GO:0003700|GO:0006355
Bva11g01678 337 Pfam Dof domain, zinc finger 70 126 IPR003851 GO:0003677|GO:0006355
Bva11g01678 337 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Bva11g01678 337 PANTHER F-BOX FAMILY PROTEIN 30 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01678 Bva-Chr11 15227965 15229268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01678 54 125 C2C2-Dof Transcription Factor Family AT5G65590 72.222 9.61e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva11g01678 zf-Dof 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01678 - - qsu:112033100 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00645 08 3356389 3357775 Bva11g01678 11 15227965 15229268 PCT