Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01242 atgaTGTCACCGGAGAATAACCCTTCAAAGCCGGAGACCAAAGTTGACAGCCAAGGTTCCGGAGGCCGGAAAACCGCCTCTGCTCGGCCACCGGAGCAGGGGCAAAAGTGCCCACGATGTGACTCTCCCAACACCAAATTCTGCTACTACAACAATTACAGCCTCACCCAGCCAAGGCATTTCTGCAAGACTTGTAGAAGATACTGGACAAAGGGTGGAGCTTTGCGTAACGTCCCAATAGGCGGTGGCTGCaggaaaaacaagaaagtgaAGTCATCATCGAGGCTTTCGGGTGACTCTGGCTCTTCTGCTGAGCTCGGTGGTCTCAAGTTTTTTCATGGTCTTTCCCCTTCTGTGGATTTTCAGCTTAGTGGGTTACCTTTTCCCAGGCTTCATCAACCTCCAAGCACTGGTATCTATAACCAGTTTTCTTCTTTCGGGGACGTTTCTGCAACTTCTGGTTCTATCACGAGTGCATCTTCCTGTTTCAACCTCGATCCCTCTGGCAGCTcgaattcttttaattacccattttcttcttcaattggGAATGGACTTAACGGTGCAATTCAAGGGATGAGCTCCTTGAATGTTCACAGCAGCCTTGCTTCTTCAATTGAATCATTGAGTTCTATAAACCAGGACTTGCACTGGAAGCTGCAACAGCAGCGGCTAGCGATGCTGGTTGGTGGggataaccaaaaaaatcataacGGCGTTTCACATGTTAATCTTGATCAGAACCAAACCCAGAAACCACAACCCATTTTGTTTCagaatcttgagatttcaaaGCCAGAGATTTGTGCTGTAGGGAACTCGAGAAAAGAAGGGCCAAGTGGGGACATAGCTACAGAGTGGTTCTTTGGGAACTCGTATGCCCCAGTTACTCCTACAACAACTTCAAGCAGTGGTGGCAATGGGAATGATAGTGCAAGCAACTGGGGTGGAGTCCATGCTTGGGGTGACATGCAGCAGCAATATAGTGCTTTGCCCTA 998 0.4489 MMSPENNPSKPETKVDSQGSGGRKTASARPPEQGQKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSSRLSGDSGSSAELGGLKFFHGLSPSVDFQLSGLPFPRLHQPPSTGIYNQFSSFGDVSATSGSITSASSCFNLDPSGSSNSFNYPFSSSIGNGLNGAIQGMSSLNVHSSLASSIESLSSINQDLHWKLQQQRLAMLVGGDNQKNHNGVSHVNLDQNQTQKPQPILFQNLEISKPEICAVGNSRKEGPSGDIATEWFFGNSYAPVTPTTTSSSGGNGNDSASNWGGVHAWGDMQQQYSALP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01242 332 MobiDBLite consensus disorder prediction 1 24 - -
Bva11g01242 332 Pfam Dof domain, zinc finger 34 89 IPR003851 GO:0003677|GO:0006355
Bva11g01242 332 MobiDBLite consensus disorder prediction 298 318 - -
Bva11g01242 332 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 13 332 - -
Bva11g01242 332 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Bva11g01242 332 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Bva11g01242 332 MobiDBLite consensus disorder prediction 1 38 - -
Bva11g01242 332 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 332 IPR045174 GO:0003700|GO:0006355
Bva11g01242 332 MobiDBLite consensus disorder prediction 298 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01242 Bva-Chr11 13066600 13068191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01242 1 332 C2C2-Dof Transcription Factor Family AT5G65590 39.779 4.85e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva11g01242 zf-Dof 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01242 - - qsu:111999513 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01195 08 6183135 6184774 Bva11g01242 11 13066600 13068191 PCT