Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00923 atggaagagagGAAGTTTGTTTGCAAGTATTGCAACAAGAGATTCCCCTGCGGGAAGTCTCTGGGTGGTCACATCAGGACCCATATGAATGAACATTCAGCTCAAGAtcataataaagaaaagcGTAATGCTGATAGGTTCAAGTTCGATGCTTCAAGGAAGAGGAGGAAAGATATTGGGTCTGAAGCTGCTTCTGCCGCTGCTGCTGATGGGAACTACATTTATGGTCTCAGAGAGAATCCCAAGAAGACTACGAGATTTGTGCATACCAATACTGCTACTCTGCATCAGGAGAAGTTCTGTAAAGAATGTGGCAAGGGTTTTCCATCATTGAAAGCTCTCTGTGGTCACATGGCTTGCCACTCGGAGAAGGAGAAGGGGAGCAATAAGCTTGAGAGCAATTCTGGCTTCAGTGAGAAGCAGAAATTGGTAATGGATAGTCAATCTGATACTGAGACTTCTACTCCAACCCATCAAAGGAGATCGAGGAGTACGAGGTTGAAGACACTTAATGATCATCCTTCTCCTGTTCATTTGGGGAATGGTTCTTCGTCTGTGTCAGAAGTGGAGCAGGAACAAGAAGAGGTTGCAAGGTGTTTGATGTTATTATCCAAAGATTTTAGCCACAGGGGTCGTTTGGCTTTGTTAACAGATTCTTCTGACAACAATTCAGTTGTTCTAGAGGCTAAATCTCCTTCTGTTGATACTAGAATTACTGTCAATAATGGTAAAAAGTATGTCTGCAATGCTTATGAGATTGTGGAGAAGAAGGTGAACAGAGAGACGAAGTTAAAGTCTGCTGAGATTGCTATTTCTGATAATTCAGATTCTGGGTATTTCAGATATGGTCCCAAAAAGGGTGGTTCAGATGTTTCAATTGAAGGGTTTTTCAAAAATCGTAACTTCAACAAGCTCAAAGTGGAAAAGGGGTCTGACTTTGAGCCTTATGGTgctgaaacaagaaagattcAGAACAAatacagaaacagaaacacTGAATCCAGGAAATTAGAGCTGGGAGATGTGGAATATGATGAAAGTGATGTAGCCAAGAGGAcgtttaattcaaaaaatggTTCTTTCTACCATAATTCAACTGGGATTTCCTGCAAGAAGACAGCAAATGGTATTCTCAAAGATGAAATCTATGACAATGGTAGAAATGAATGGAGGTACGAGTGCTTTAGCAACGAAAGGGTCGATGTCTCTTATGAATCAACATATGAGAGTGATGAGAACAGCACAGACACTGATTCTTATCCTGCTGTGAAGATCCATGGCACTAAGGCCCTCAATCAGAAGAAAACCAACATGGccaagaagaaattaatgtcAAAGAAAAGCAGAGGACATGAATGCCCAGTTTGTCACAAGATTTTCAAGTCAGGCCAAGCATTGGGAGGTCACAAAAGGTCCCATTTTGTTGGTAGTTCTGAAGAAAACAGTCTGGTAATAAAACAAGGTCCAGCTGCTGTTCCTTGTCTAATCGATCTCAACCTACCTGCTCCTGTTGACGAATA 1520 0.3921 MEERKFVCKYCNKRFPCGKSLGGHIRTHMNEHSAQDHNKEKRNADRFKFDASRKRRKDIGSEAASAAAADGNYIYGLRENPKKTTRFVHTNTATLHQEKFCKECGKGFPSLKALCGHMACHSEKEKGSNKLESNSGFSEKQKLVMDSQSDTETSTPTHQRRSRSTRLKTLNDHPSPVHLGNGSSSVSEVEQEQEEVARCLMLLSKDFSHRGRLALLTDSSDNNSVVLEAKSPSVDTRITVNNGKKYVCNAYEIVEKKVNRETKLKSAEIAISDNSDSGYFRYGPKKGGSDVSIEGFFKNRNFNKLKVEKGSDFEPYGAETRKIQNKYRNRNTESRKLELGDVEYDESDVAKRTFNSKNGSFYHNSTGISCKKTANGILKDEIYDNGRNEWRYECFSNERVDVSYESTYESDENSTDTDSYPAVKIHGTKALNQKKTNMAKKKLMSKKSRGHECPVCHKIFKSGQALGGHKRSHFVGSSEENSLVIKQGPAAVPCLIDLNLPAPVDE 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00923 506 MobiDBLite consensus disorder prediction 123 185 - -
Bva11g00923 506 Pfam C2H2-type zinc finger 6 29 - -
Bva11g00923 506 Pfam C2H2-type zinc finger 101 123 - -
Bva11g00923 506 Pfam C2H2-type zinc finger 451 473 - -
Bva11g00923 506 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Bva11g00923 506 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 506 - -
Bva11g00923 506 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Bva11g00923 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Bva11g00923 506 ProSitePatterns Zinc finger C2H2 type domain signature. 453 473 IPR013087 -
Bva11g00923 506 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 506 - -
Bva11g00923 506 SMART c2h2final6 451 473 IPR013087 -
Bva11g00923 506 SMART c2h2final6 6 28 IPR013087 -
Bva11g00923 506 SMART c2h2final6 99 121 IPR013087 -
Bva11g00923 506 MobiDBLite consensus disorder prediction 131 160 - -
Bva11g00923 506 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Bva11g00923 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 451 473 IPR013087 -
Bva11g00923 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Bva11g00923 506 Gene3D Classic Zinc Finger 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00923 Bva-Chr11 11367925 11369445 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva11g00923 zf-C2H2_6 2.3e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00923 11 11367925 11369445 Bva11g00923 11 11367925 11369445 ECH