Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00809 ATGCTGGTTCGGAGGAGACCTATGAGCTGGAGAAGGGTGGCGAAGTCTATTCAAGCTCTGTTGGGTCATGGCTTGCTTTTCTCATTCACGCTTCTGCTGGTTCTCAAGGTTGATCATTTCGTGAATTACTCATGGTGGATCATATTTTCACCTTTATGGCTTTTTCATGCTGTTGTAGCACGTGGCAGGTTTTCTTTGCCGGCTCCTTCAATGCCGCATGACCGCAATTGGGCTCCTTATCATGCCATCATGGCAATGCCATTACTCGTTGCTTTTGAGCTACTTGTTTGTATACATCTTGGCAGCAGCTATGTGGTTAATTTGAGGATTGTATTCCTACCCCTCTTGGCTCTTGAAGTGGCAATTTTGGTTGATAATATCAGGATGTGTAGAGCTTTGATGCCTGGAGATGATGAAACCATGACTGACGAGGCGATATGGGAAACCCTTCCGCACTTCTGGGTTGCAATATCCATGGTCTTCCTTATTGCTGCTACCGTATTCACTCTCCTAAAGATATGTGGTGATGTTGCTGCTCTGGGCTGGTGGGacttatttattaactatGGCATTGCAGAATGCTTTGCCTTTCTTGTTTGTACAAAGTGGAACAATCCAAAAATTCATGGAAATTATAACATAACGGAACCGGGGTCATCAACATTTTCATCATCGTTTAGTATAAGGTACCTCGACTGGGATAGAGGCTTCGTAGTTTCCTCGGATGATGTTAGGCAAGAAAGTGGACTATGCAACTTGCAGGACATTGGTGGACATATTATGAAGATTCCTTTCATTGCTTTCCAAATACTGTTGTTTATGCACTTAGAGGGAACGCCACCAGGTGCCAGAAATGTGCCATATTGGGTTATTTTTTCTCCCCTTCTTTTGTTGCAAGCAGCTGGGGTTTTATTTGCAACATATAGATTGATGGAAAAAGTAGTTATCTTATTTCATAGTGGATCTGTTTCTCAAGGTTATTCAGCTATAGCATCCAAAGCCCATGATTGCTTCGGGTTCTACCATCATGGATCTAGATTCCTTGGTTGGTGGTCCATTGATGAAGGAAGTCGAGAGGAACGAGCTAGACTTTATTGTACTGGGAATTCTGGGTATAATACTTTCACACCCGATACCGTGAAGAAAATGCCTAAAGCTGATCTCGTTGACCAGATCTGGAAACTGCAAACTTCACTGAGTCAGCAGTCAGAAGTCACCAAATTTAGCCAGGAGGAATATGAAAGACTTCAAAATGAAAAGATCCTATGCAGAATTTGCTTCGAGGAGCAAATTAACGTTGTCTTGCTTCCATGTAGGCATCATGTTCTTTGCAGCACTTGCGGTGGTAAATGTAAGAGGTGCCCGATTTGCCGCGTCACCATTGAAGAACAAATGCCTGTATATGATGTATA 1412 0.4271 MLVRRRPMSWRRVAKSIQALLGHGLLFSFTLLLVLKVDHFVNYSWWIIFSPLWLFHAVVARGRFSLPAPSMPHDRNWAPYHAIMAMPLLVAFELLVCIHLGSSYVVNLRIVFLPLLALEVAILVDNIRMCRALMPGDDETMTDEAIWETLPHFWVAISMVFLIAATVFTLLKICGDVAALGWWDLFINYGIAECFAFLVCTKWNNPKIHGNYNITEPGSSTFSSSFSIRYLDWDRGFVVSSDDVRQESGLCNLQDIGGHIMKIPFIAFQILLFMHLEGTPPGARNVPYWVIFSPLLLLQAAGVLFATYRLMEKVVILFHSGSVSQGYSAIASKAHDCFGFYHHGSRFLGWWSIDEGSREERARLYCTGNSGYNTFTPDTVKKMPKADLVDQIWKLQTSLSQQSEVTKFSQEEYERLQNEKILCRICFEEQINVVLLPCRHHVLCSTCGGKCKRCPICRVTIEEQMPVYDV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00809 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 469 IPR013083 -
Bva11g00809 470 Coils Coil 399 419 - -
Bva11g00809 470 ProSiteProfiles Zinc finger RING-type profile. 423 458 IPR001841 -
Bva11g00809 470 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 470 - -
Bva11g00809 470 SMART ring_2 423 457 IPR001841 -
Bva11g00809 470 Pfam Transmembrane Fragile-X-F protein 35 298 IPR019396 -
Bva11g00809 470 Pfam Zinc finger, C3HC4 type (RING finger) 421 463 - -
Bva11g00809 470 SUPERFAMILY RING/U-box 414 466 - -
Bva11g00809 470 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00809 Bva-Chr11 10739840 10745948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00809 8 470 C3H Transcription Factor Family AT1G73950 61.783 0.0 591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00809 11 10739840 10745948 Bva11g00809 11 10739840 10745948 ECH