Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00801 ATGGATGGAGGTAGTTGCTTAGATGAAAGTACCACAACTGACTCTGTTTCGGTGTCCCTATCGCCGGTGACCACTCTAACTTCGCCGACCCAGAAGTTGTCTCCGCCGCCGAATAGTCTCTACCGTGTCGGCAGCGGTACCAGCACCATCGTGGACTCAGACAGCGGTGCCGAGGCCGAGTCCAGGAAACTGCCGTCGTCAAAATACAAAGGCGTGGTGCCCCAACCCAATGGCCGCTGGGGCGCCCAGATTTACGAGAAGCACCAGCGTGTGTGGTTGGGCACGTTCAACGAGGAAGACGAAGCCGCTAGAGCGTATGACATCGCTGCCCAAAGGTTCCGTGGGAAAGACGCCGTCACTAACTTCAAGCCCCTCGCCGCCGGCGACGACCATGAAACCGCGTTCCTCAGCGCGCATTCCAAGGCCGAGATCGTCGACATGCTCAGAAAACACACTTACAACGACGAGCTAGAACAGAGCAAGAAAAACTACGGGCTACTAGACAGTAACGGAAAGAGAGTCAAAAACGAAGGGACCGTTGACGGATCGGGGATAAGAACGGATCGGGTCCAGAAAGCGCGTGAACAGCTTTTCGAGAAAGTCGTTACGCCGAGCGACGTGGGCAAACTGAACCGATTAGTTATACCGAAGCAGCACGCGGAGAAGCACTTCCCTCTACAGAAAGGAAGCGCTTCGGCAGCTTGTGCTACAAAAGGGGTGCTTTTGAATTTCGAAGACGTTGGAGAGAAAGTGTGGCGATTTCGATACTCGTATTGGAACAGTAGCCAGAGCTACGTGCTCACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTCAAAGCCGGCGACACGGTTAACTTCTACAGGTCGACCGGACCGGACAAGCAACTCTATATTGATTGGAAAACAAGGCAGCATGATTGTAATAATAACAGCAACACCAGCAACTTCTTGAACCCGGTCGAACCGGTGGTTCAACCGGTACCGATGGTCAGATTATTCGGGGTCAACATTTTGAACATACCAGCTTCTGCTTCCATGGAAGCTGTTTCTGTTCCCGGAAGCTGCAATGGGATCAAGAGGAAAGAAATGGAGCTTTTTACATTAGAGTGTAGTAAGAAGCCAAAGATCATTGGGGCTTCATA 1148 0.5235 MDGGSCLDESTTTDSVSVSLSPVTTLTSPTQKLSPPPNSLYRVGSGTSTIVDSDSGAEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLAAGDDHETAFLSAHSKAEIVDMLRKHTYNDELEQSKKNYGLLDSNGKRVKNEGTVDGSGIRTDRVQKAREQLFEKVVTPSDVGKLNRLVIPKQHAEKHFPLQKGSASAACATKGVLLNFEDVGEKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVNFYRSTGPDKQLYIDWKTRQHDCNNNSNTSNFLNPVEPVVQPVPMVRLFGVNILNIPASASMEAVSVPGSCNGIKRKEMELFTLECSKKPKIIGAS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00801 382 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 4 381 - -
Bva11g00801 382 Gene3D - 187 317 IPR015300 -
Bva11g00801 382 Pfam AP2 domain 67 115 IPR001471 GO:0003700|GO:0006355
Bva11g00801 382 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 4 381 IPR044800 GO:0003700
Bva11g00801 382 MobiDBLite consensus disorder prediction 1 70 - -
Bva11g00801 382 SMART B3_2 198 306 IPR003340 GO:0003677
Bva11g00801 382 CDD B3_DNA 197 291 IPR003340 GO:0003677
Bva11g00801 382 MobiDBLite consensus disorder prediction 1 55 - -
Bva11g00801 382 SUPERFAMILY DNA-binding pseudobarrel domain 196 304 IPR015300 -
Bva11g00801 382 CDD AP2 67 122 IPR001471 GO:0003700|GO:0006355
Bva11g00801 382 ProSiteProfiles B3 DNA-binding domain profile. 198 306 IPR003340 GO:0003677
Bva11g00801 382 SUPERFAMILY DNA-binding domain 67 123 IPR016177 GO:0003677
Bva11g00801 382 Gene3D AP2/ERF domain 67 124 IPR036955 GO:0003700|GO:0006355
Bva11g00801 382 ProSiteProfiles AP2/ERF domain profile. 68 123 IPR001471 GO:0003700|GO:0006355
Bva11g00801 382 Pfam B3 DNA binding domain 198 302 IPR003340 GO:0003677
Bva11g00801 382 SMART rav1_2 68 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00801 Bva-Chr11 10684070 10685543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00801 5 379 B3 DNA Binding Superfamily AT1G25560 61.619 3.04e-150 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Bva11g00801 B3 8.1e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00801 11 10684070 10685543 Bva11g00801 11 10684070 10685543 ECH