Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00774 ATGAAGGTTTTTGTGAAGACCCTCAAAGGCACCCACTTCGAAATTGAAGTGAAGCCGGAAGACATGGTTGCTgatgtgaaaaaaattatagaaactgTTCAAGGTGCTGATGTCTATCCGTCTACACAGCAAATGCTTATCCATCAAGGGAAAGTTCTCAAAGATAGCACTACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAAAGCTCATCTGGAGAGGGTTCTACCACAACTGCAGCTAAGGCCCCACAGACAAGTGCAGCTCCTACTCCAGCCCCAGCATCATCGTCACCTCCAGCACCCGCTGTCACTGCAGCACCGCCCGTACCTGCACCTACACCTACACCTGCTCCTGCACCTACCCGTGCTCCTGCTTCAGAAGCTGCTCCTGCGTCAGTTGATATCTATGGGCAGGCAGCGTCTAATCTTGTTGCTGGAACCAGCTTGGAGGAAACAATTCAGCAAATTCTTGACGTGGGTGGTGGAAGTTGGGATAGGGATACTGTTGTTCGTGCTCTTCGAGCTGCTTTTAACAACCCAGAGAGAGCTGTTGAATATTTGTATAGTGGTATCCCAGAGCAAGCTGAAGCACCACCTGTTGCCCGAGCCCCAGCTAGTACACAGACTACTAATCCTCCAGCTCCAGCTCCACAAGGGGCACAGCCAGCACCTGCTGTTCCTTCAGGTGGACCAAATGCTAATCCGTTAGACCTCTTTCCCCAGGGTCTTCCCAATGTTGGTTCTGGTGCTGCTGGGGCAGGCAGTCTCGATTTTCTGCGCAACAGTCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCCAATCCACAAATTTTGCAGCCTATGCTTCAAGAACTTGGCAAACAAAATCCTCATCTTATGAGATTGATCCAAGAGCATCAAACTGACTTCCTTCGCCTGATAAATGAACCAATGGAAGGGGGCGAGGGGAATATATTGAATCAGCTGGCTGCTGCTATGCCCCAAGCAGTAACTGTCACCCCTGAGGAGCGTCAAGCCATCGAACGCCTTGAAGCAATGGGCTTTGATCGTGCTCTTGTATTGGAAGTGTACTTTGCTTGCAACAAAAACGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCACGAGTTTGAGGAATG 1175 0.4817 MKVFVKTLKGTHFEIEVKPEDMVADVKKIIETVQGADVYPSTQQMLIHQGKVLKDSTTLEENKVAENSFIVIMLSKSKSSSGEGSTTTAAKAPQTSAAPTPAPASSSPPAPAVTAAPPVPAPTPTPAPAPTRAPASEAAPASVDIYGQAASNLVAGTSLEETIQQILDVGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPEQAEAPPVARAPASTQTTNPPAPAPQGAQPAPAVPSGGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPMEGGEGNILNQLAAAMPQAVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00774 391 Gene3D - 152 202 - -
Bva11g00774 391 PRINTS DNA repair protein Rad23 signature 341 357 IPR004806 GO:0006289
Bva11g00774 391 PRINTS DNA repair protein Rad23 signature 358 372 IPR004806 GO:0006289
Bva11g00774 391 PRINTS DNA repair protein Rad23 signature 292 314 IPR004806 GO:0006289
Bva11g00774 391 PRINTS DNA repair protein Rad23 signature 373 388 IPR004806 GO:0006289
Bva11g00774 391 SUPERFAMILY XPC-binding domain 263 328 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bva11g00774 391 SUPERFAMILY UBA-like 157 211 IPR009060 GO:0005515
Bva11g00774 391 Pfam XPC-binding domain 266 321 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bva11g00774 391 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 390 - -
Bva11g00774 391 MobiDBLite consensus disorder prediction 78 101 - -
Bva11g00774 391 SMART CBM 264 307 IPR006636 -
Bva11g00774 391 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 344 385 IPR015940 -
Bva11g00774 391 SMART ubq_7 1 75 IPR000626 GO:0005515
Bva11g00774 391 Gene3D - 1 80 - -
Bva11g00774 391 SMART uba_6 347 384 IPR015940 -
Bva11g00774 391 SMART uba_6 159 199 IPR015940 -
Bva11g00774 391 MobiDBLite consensus disorder prediction 102 133 - -
Bva11g00774 391 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 157 200 IPR015940 -
Bva11g00774 391 MobiDBLite consensus disorder prediction 78 139 - -
Bva11g00774 391 MobiDBLite consensus disorder prediction 207 247 - -
Bva11g00774 391 Gene3D - 257 322 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bva11g00774 391 Pfam UBA/TS-N domain 159 197 IPR015940 -
Bva11g00774 391 Pfam UBA/TS-N domain 347 382 IPR015940 -
Bva11g00774 391 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Bva11g00774 391 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 390 - -
Bva11g00774 391 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Bva11g00774 391 Gene3D - 339 386 - -
Bva11g00774 391 SUPERFAMILY UBA-like 328 389 IPR009060 GO:0005515
Bva11g00774 391 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Bva11g00774 391 CDD UBA1_Rad23_plant 153 202 - -
Bva11g00774 391 TIGRFAM rad23: UV excision repair protein Rad23 1 390 IPR004806 GO:0006289
Bva11g00774 391 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00774 Bva-Chr11 10553498 10558394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00774 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.486 2.21e-07 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00774 11 10553498 10558394 Bva11g00774 11 10553498 10558394 ECH