Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00768 ATGAATAATACCTGCAAAAAACTCAAACAAAAGCCTAATCACTTTCAAGACTCCCGAATGGCGAGAAAGCTCCGGATCATCTGCCATGACCCGGATGCAACTGATTCATCTTCAAGCGAAGACGAAGCTGAGAGGAAGCCTAGGAAACTCAAACGCATCGTCCGAGAAGTGAGTCTTCCTCGTCTTTTTCCTGAGAAATCTGCTGTTGAAACTGAGACTTCTGCTCAAGATAGCAGCAATGGAGGCCTTGTCTCCTGCGCTGATGGTCAATCCCTCAGTAGGAAGAGGGCTTTGACCAAAACCCCATCAACGAGAAGACCTGGTGCTTCCAAGTACAGAGGTGTTCGACAAAGAAAATGGGGGAAATGGGCTGCAGAGATTCGGGACCCTTTCAAGGGTGCACGCATCTGGTTGGGAACTTACAACACTGCAGAGGAAGCTTCCCAAGCTTACGAGAGTAAAAGGCAGGAATTTGAGCGAGCTATGGCCAAGGTTCAATCCGATAAGAGCAACAACTCTTCTGATGCCATTCCTCTTTCTAGAAAGAGCAACAGTGTCACTTGCCCCATTGCTGCTTCTGATTCAGGCAAGTATGCTCCTACCTCCGAGGACTCAGAGAGTACATTGTCTCACACTTCATCATCTTCTGTGGAATTGGATACCTTAGCATCCAAAGAGAATGTCAATGTCATTGTCAAGGTTTCAAGCAAGGAAGAACCTGTTGAACCGGTTCTGGAGACTGATGATTTACAGAACGAATTTGCAGATCTGCAAATTCCCGATTTGAGCTTTTTGAGCATGCCGCTACCACCATCCGGGCCAGCCGAGACAGACACAAGTCTTGCTATTGACTTAGATTGGTTtatgtttgatgaattttcacaggctttggatgattttggtgGCCTTGACAACTTGCAAATCAGTGGTTTTGATGAGAATGAATCAAGTGAGCTACCCGATTTCGATTTTGATCTTGGTGCCGATGAGTTTATTGGCTGGACAGAGGAGCCCCTCAATATACCGTGCGCTTA 1034 0.4497 MNNTCKKLKQKPNHFQDSRMARKLRIICHDPDATDSSSSEDEAERKPRKLKRIVREVSLPRLFPEKSAVETETSAQDSSNGGLVSCADGQSLSRKRALTKTPSTRRPGASKYRGVRQRKWGKWAAEIRDPFKGARIWLGTYNTAEEASQAYESKRQEFERAMAKVQSDKSNNSSDAIPLSRKSNSVTCPIAASDSGKYAPTSEDSESTLSHTSSSSVELDTLASKENVNVIVKVSSKEEPVEPVLETDDLQNEFADLQIPDLSFLSMPLPPSGPAETDTSLAIDLDWFMFDEFSQALDDFGGLDNLQISGFDENESSELPDFDFDLGADEFIGWTEEPLNIPCA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00768 344 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
Bva11g00768 344 Coils Coil 141 168 - -
Bva11g00768 344 MobiDBLite consensus disorder prediction 28 49 - -
Bva11g00768 344 MobiDBLite consensus disorder prediction 1 20 - -
Bva11g00768 344 CDD AP2 110 151 IPR001471 GO:0003700|GO:0006355
Bva11g00768 344 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Bva11g00768 344 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Bva11g00768 344 MobiDBLite consensus disorder prediction 69 106 - -
Bva11g00768 344 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 344 - -
Bva11g00768 344 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Bva11g00768 344 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 9 344 - -
Bva11g00768 344 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Bva11g00768 344 MobiDBLite consensus disorder prediction 65 115 - -
Bva11g00768 344 SUPERFAMILY DNA-binding domain 110 160 IPR016177 GO:0003677
Bva11g00768 344 MobiDBLite consensus disorder prediction 198 218 - -
Bva11g00768 344 MobiDBLite consensus disorder prediction 159 218 - -
Bva11g00768 344 Gene3D AP2/ERF domain 110 166 IPR036955 GO:0003700|GO:0006355
Bva11g00768 344 MobiDBLite consensus disorder prediction 165 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00768 Bva-Chr11 10508811 10511331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00768 16 343 AP2-EREBP Transcription Factor Family AT1G68550 38.123 3.68e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva11g00768 AP2 7.6e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00768 11 10508811 10511331 Bva11g00768 11 10508811 10511331 ECH