Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00715 ATGCACAAATTCGATTTCTCTGAGTTTCCCTCGCACCAAACACGCCCTCGCTTTCCCTCCAAACCATGCCCGCTATATAACCTTGCTCAAccttccctctctctctcatatacctttctctctctaaaaccCTCTCCCtttccctcttttttctctctaaggTGTTACACAGAACTAGCTTTTCGATTCAGGGTTGAGTCTTGCATCGGGAAAATGCACAATAACGAAGCTTCATCTCCATTCGGCAATGGCGGACTTGGCGCAAACACCACCACCGCCGACCAAATGCAGGCAAACAGCGCCGTCTTTGCTGCGCTCCACTCTACACTGTTCTCTGACAACCCATCGCTCCTTGCTGGTAGCGGCTCGCTTCACCCATTCGAAGGAAACCCGGATTTTAAGTACTCTGACTCGGCGATTCAGAGCCATTTCTGTGACTCTTGCGTGATTCAGAAGCGTCAGGATATGGTGAACCGCCAAAGTATCCGCCTCAGTCACCTTCTGGAAACTTCAAAACTAGAAGTCAATGCTCTGCGACAAGAGAACGCCCACCTTCGTGCTGTGAATCGCGAGCTGAGCAATCAGTTGAATTTTGTGCTTCAGGCCTCCGTTAACCAACTGGATGGTTCCTCTGGCCCTATGACTTCGTTTGACGTTACAAATGGGTTTGGCGGGCTCCACATTGGGGACACCAGAGAAGGGAAAGAGAACTTTGCCAATTGGAAGGACCAGGAAGTGTCTGATGAGAGCCCAACTAGCGTGATTGAGAGCCCTGTTGAAGTGGAGAGGTTCTCGCTGCCGAAGAGTATATCTGTGAGGTCAAATGGGTACTTGAAGATGGCTCAGACTGCTGGAAGTGCCGGCAGTGCAAGCCGCACCAAAAGCGCTACTCGGCCACGAACTACCTCGAGTCCACTTGATGACGTTCAAAAGGTATATGTGCGTGGAGGGAAGCAGGAGCAAGAGCCTCTTGAGATGGTAGTATACAACCAAGGCATGTTCAAAACAGAGCTGTGCAACAAATGGCAGGAGACTGGTACTTGCCCTTACGTAGATCACTGCCAATTCGCTCATGGAATTGATGAGCTCCGCCCTGTGATTCGCCACCCACGCTACAAGACAGAGGTCTGCAGGATGGTCCTTGCTGGTGTTGTCTGCCCATATGGTCATAGATGCCATTTCCGCCATGCACTCACCGAACAAGAAAAGGCCATAGCACAGCCTAAGTCCAGGACAATGAAGCTGGAAAGATA 1253 0.4836 MHKFDFSEFPSHQTRPRFPSKPCPLYNLAQPSLSLSYTFLSLKPSPFPSFFSLRCYTELAFRFRVESCIGKMHNNEASSPFGNGGLGANTTTADQMQANSAVFAALHSTLFSDNPSLLAGSGSLHPFEGNPDFKYSDSAIQSHFCDSCVIQKRQDMVNRQSIRLSHLLETSKLEVNALRQENAHLRAVNRELSNQLNFVLQASVNQLDGSSGPMTSFDVTNGFGGLHIGDTREGKENFANWKDQEVSDESPTSVIESPVEVERFSLPKSISVRSNGYLKMAQTAGSAGSASRTKSATRPRTTSSPLDDVQKVYVRGGKQEQEPLEMVVYNQGMFKTELCNKWQETGTCPYVDHCQFAHGIDELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAIAQPKSRTMKLER 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00715 417 Gene3D - 328 366 - -
Bva11g00715 417 Gene3D - 367 403 - -
Bva11g00715 417 ProSiteProfiles Zinc finger C3H1-type profile. 371 399 IPR000571 GO:0046872
Bva11g00715 417 ProSiteProfiles Zinc finger C3H1-type profile. 333 361 IPR000571 GO:0046872
Bva11g00715 417 Coils Coil 168 195 - -
Bva11g00715 417 PANTHER CCCH ZINC FINGER/TIS11-RELATED 119 409 IPR045877 GO:0003729
Bva11g00715 417 SUPERFAMILY CCCH zinc finger 330 365 IPR036855 GO:0046872
Bva11g00715 417 SMART c3hfinal6 333 360 IPR000571 GO:0046872
Bva11g00715 417 SMART c3hfinal6 371 398 IPR000571 GO:0046872
Bva11g00715 417 MobiDBLite consensus disorder prediction 283 306 - -
Bva11g00715 417 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 119 409 - -
Bva11g00715 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 334 359 IPR000571 GO:0046872
Bva11g00715 417 SUPERFAMILY CCCH zinc finger 367 401 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00715 Bva-Chr11 10153157 10153492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00715 135 415 C3H Transcription Factor Family AT1G68200 52.431 6.45e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva11g00715 zf-CCCH 5.8e-11 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00715 11 10153157 10153492 Bva11g00715 11 10153157 10153492 ECH