Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00703 ATGAAGGACCGGCCTCCGCCGTCTCCGCATGGCGAAATTTACGTCCCTCCCCACCACCGTCTCCGCTCCGTCACCTCCTCCGCCAATGGCAAGACCTCTCCTGGTCCTATTGACTCCAAGCTTCGCAAAAGCCAAGCTGAAGTTTTAAAACCTGAAGATACTATCCTGGCACACTCGCAGACCCAGCTGCAGCAGGAGCAAATTCACAAGGGGAATTCCGGCAATGTTTCTGCTTATGATGATGGCATTTCCGACAATGGGGCGGATCGTGAGTTTGACACATCGTCTCTGACGAGTGCTTACCCCAATGATAACGCTGATGAATGGAAGCAGAAATTGGCCTTGTTTTTAAATGACAAGAGTAAGCAAGAGTTGATTTCAAGGGAGAAAAAGGATAGACgtgattttgagaaaatagcAGCTTTGGCAAGCAGAATGGGATTATATAgCCATATGTATGCAAAAGTTGTTGTCTTCAGTAAGGTGCCACTGCCGAACTATAGATATGATCTGGATGATCGACGACCGCAGAGGGAgGTGTGCATGCCTTTTACCTTGTTAAGAAGAGTTGGTGCATATCTTGGAGAATACCTTTCCCAAAAGTCTAAGGTGAAGGGAAGCTTTCCAGATTTGTCCTTAGAAAGAACAAGCAGTAACAGTAGTATCAGTACAGATGAAGGCTTTTTTGAGCAACCTGAGCCACTACCATCCAGTAAGGCAGTTGTGGAGAAAATTCTTTGGCAGAGAAGCCTACAAATGCTTGATCAGCAACAAACTTGGCAGGAATCTCCCGAGGGAAGAAGAATGCTGGAATTTCGTAGAAGTCTCCCTGCATATAAAGAGAAGGAAGCCATATTGTCCGTCATATCAAAGAATCAGGTTGTTATTATCTCAGGGGAAACAGGTTGTGGTAAGACAACGCAGATTCCCCAGTTCATTTTAGAATCTGAGACAGAGTCTCTTCATGGAGCtgtttgtaatattatatgtacaCAGCCAAGACGCATTTCAGCCATGTCTGTTTCTGAACGAATTGCCCTTGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGGTATAAAGTTCGATTTGAGGGTATGAAGGGGAAAGATACACGTCTTCTATTTTGCACCACTGGCATCTTATTGAGAAGATTGCTAGTTGATAGAAACTTAAAAGGTGTAACTCATGTGATTGTGGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTATTGTTCTTAAAGATCTTCTCCCTCGCAGACCCGAGCTGAGGCTGATTTTGATGAGTGCTACCCTAGATGCACAGCTCTTCTCCTCTTACTTTGATGCTGCTCCAATCATAAAAATTCCGGGCTTCACATACCCcgttaaaagttattttttggaGGACATTCTGCAAATGACAGGCTACAGATTGACTCCTTACAACCAAATTGATGACTATGGCCAAGAAAGGATGTGGAAAATGAGCAAACAAGCtccaagaaaaaggaaaagccaAATTGCTTCTGCCGTAGAGGATGCACTTAGAGCTGCTGATTTCAAGAATTACAGCCCACAGACACAGGAATCTTTGCTGTGTTGGAATCCTGACTGTATTGGTTTTAATCTCATAGAGTATATCTTATCCAATATATGTGAGAATGAAAGACGAGGTgctgttttagtttttatgaCTGGATGGGATGATATAAGCTCGCTGAATGATAAGCTCCTAGCACATCCAATATTGGGAGATCCAAACCGAGTTTTGTTGCTTAGATGCCATGGCTCAATGGCCAGTTCAGAGCAGAGGTTAATATTTGAAGAGCCTGAAGATGGGATAAGGAAAATAGTGCTGGCAACCAATATTGCTGAGACAAGTATTACCATAAATGatgttgtttttgttcttGACTGTGGGAAGGCCAAAGAAACATCATATGATGCACTAAACAATACACCTTGTTTGCTTCCATCCTGGATCTCCAAGGTTTCTGCTCTACAAAGAAGAGGAAGAGCGGGTCGTGTTCAACCTGGAGAATGTTACCATCTCTATCCTAGATGTGTATATGATGCTTTTGCAGAGTATCAATTGGCAGAAATTTTGAGGACACCTTTGCAATCTCTCTGCCTGcaaatcaaaagtttaaaacttgGAAGTATATCTGAATTCCTGTCAAGAGCTTTGCAGTCGCCGGAGTTACTTGCggTGCAAAATGCCattgaatatttgaaaataattgggGCTTtggatgaaaatgaagatCTGACCATTCTAGGGCGCTATTTGACAATGCTTCCGGTGGAACCCAAACTTGGCAAGATGCTTATATTAGGTGCTATCTTCAATTGCTTGGACCCCATATTAACTATTGCTGCTGGCCTCAACGTGAGAGATCCTTTCCTAACACCACTGGATAAAAAAGATCTTGCAGAGGCAGCAAAATCTCAATTTGCCCAAGATTACAGTGATCACCTTGCCCTTGTGAGGGCTTACGAGGGCTGGAAAGATGCTGAAGTGGACCAAGCTGGATATGAGTACTGttggaaaaattttctttcagcaCAATCAATGAAAGCAATTGATGCTCTTCGGTGGGAATTCTTATCCTTGCTCAAGGATATTGGATTAGTGGATAGCAATGGAACAACCTGCAATGCATGGAGCCATGATGTGCATCTCATTCGAGCTGTTATTTGCTATGGCCTGTATCCGGGAATTTGCTCTGTTGTGcACAATGAGAAATCATTTTCTCTGAAAACAATGGAGGATGGCCAAGTGCTCCTATATTCGAACTCGGTGAATGCTCGGGAAACTGAAATTCCATATCCATGGCTAGTTTTTAACGAGAAGATAAAAGTGAACTCTGTTTTCCTCCGTGATTCAACAGCTGTGCCTGATTCTGTGTTGCTTCTTTTTGGTGGAGGCATATCAAAAGGAGATGCTGATGGTCACCTAAAAATGTTAGGAGGATATCTGGAGTTTTTCATGAAACCTGTTGTTGCTGACATGTATCTAACCATAAAAAGGGAACTCGATAACTTGATTCAGACCAAACTACATCATCCAAGGATGAGCATACAAACACACCATGAGCTTATTTCCGCTGTTCGGTTGCTGATTTCGGAAGAAAAGTCTGAAGGCAGATTTATATTTGGTCGCCAGGTCCTTAAACCATCAGAGCTAATGGTAGTGGCCTCACAGCCAGCCTTGGTTTCAAGGACTGAGAGTGGACCCGGCGGTGATAATTCTAAAAATCAGCTCCAAACATTGCTCACGAGGGCAGGTTATGCTGCTCCCAGCTATATAACTCAGCAATTGAAGAACAACAAGTTTCGAGCCACCGTGGAGTTTAATGGAATGCAAATAATTGGCCAACCTTGTAACAATAAGAAAAGTGCGGAAAAAGACGCCGCAGCTGAGGCGCTGCAGTGGCTGATCGGCGGAAGGCAGACAGGCCATGAGTATATCAATCATGTGTCCATGTTgctaaagaaaagtaaaaaagatcaTAGCTA 3509 0.4115 MKDRPPPSPHGEIYVPPHHRLRSVTSSANGKTSPGPIDSKLRKSQAEVLKPEDTILAHSQTQLQQEQIHKGNSGNVSAYDDGISDNGADREFDTSSLTSAYPNDNADEWKQKLALFLNDKSKQELISREKKDRRDFEKIAALASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPQREVCMPFTLLRRVGAYLGEYLSQKSKVKGSFPDLSLERTSSNSSISTDEGFFEQPEPLPSSKAVVEKILWQRSLQMLDQQQTWQESPEGRRMLEFRRSLPAYKEKEAILSVISKNQVVIISGETGCGKTTQIPQFILESETESLHGAVCNIICTQPRRISAMSVSERIALERGEKLGESVGYKVRFEGMKGKDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAQLFSSYFDAAPIIKIPGFTYPVKSYFLEDILQMTGYRLTPYNQIDDYGQERMWKMSKQAPRKRKSQIASAVEDALRAADFKNYSPQTQESLLCWNPDCIGFNLIEYILSNICENERRGAVLVFMTGWDDISSLNDKLLAHPILGDPNRVLLLRCHGSMASSEQRLIFEEPEDGIRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSALQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLAEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGALDENEDLTILGRYLTMLPVEPKLGKMLILGAIFNCLDPILTIAAGLNVRDPFLTPLDKKDLAEAAKSQFAQDYSDHLALVRAYEGWKDAEVDQAGYEYCWKNFLSAQSMKAIDALRWEFLSLLKDIGLVDSNGTTCNAWSHDVHLIRAVICYGLYPGICSVVHNEKSFSLKTMEDGQVLLYSNSVNARETEIPYPWLVFNEKIKVNSVFLRDSTAVPDSVLLLFGGGISKGDADGHLKMLGGYLEFFMKPVVADMYLTIKRELDNLIQTKLHHPRMSIQTHHELISAVRLLISEEKSEGRFIFGRQVLKPSELMVVASQPALVSRTESGPGGDNSKNQLQTLLTRAGYAAPSYITQQLKNNKFRATVEFNGMQIIGQPCNNKKSAEKDAAAEALQWLIGGRQTGHEYINHVSMLLKKSKKDHS 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00703 1169 Gene3D - 1062 1148 - -
Bva11g00703 1169 SMART helicmild6 568 674 IPR001650 -
Bva11g00703 1169 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 453 IPR014001 -
Bva11g00703 1169 MobiDBLite consensus disorder prediction 215 234 - -
Bva11g00703 1169 Pfam Helicase associated domain (HA2) 737 811 IPR007502 GO:0004386
Bva11g00703 1169 Pfam Helicase conserved C-terminal domain 541 673 IPR001650 -
Bva11g00703 1169 SMART ha2_5 736 826 IPR007502 GO:0004386
Bva11g00703 1169 MobiDBLite consensus disorder prediction 1 46 - -
Bva11g00703 1169 Gene3D - 537 693 IPR027417 -
Bva11g00703 1169 PANTHER ATP-DEPENDENT RNA HELICASE 64 1095 - -
Bva11g00703 1169 Gene3D - 238 454 IPR027417 -
Bva11g00703 1169 MobiDBLite consensus disorder prediction 89 103 - -
Bva11g00703 1169 MobiDBLite consensus disorder prediction 65 80 - -
Bva11g00703 1169 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 64 1095 - -
Bva11g00703 1169 Pfam Double-stranded RNA binding motif 1081 1143 IPR014720 -
Bva11g00703 1169 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 540 714 IPR001650 -
Bva11g00703 1169 SMART DRBM_3 1081 1144 IPR014720 -
Bva11g00703 1169 SMART ultradead3 274 462 IPR014001 -
Bva11g00703 1169 CDD DEXHc_RHA-like 292 452 - -
Bva11g00703 1169 SUPERFAMILY dsRNA-binding domain-like 1075 1143 - -
Bva11g00703 1169 Gene3D - 716 821 - -
Bva11g00703 1169 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 834 IPR027417 -
Bva11g00703 1169 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 892 973 IPR011709 -
Bva11g00703 1169 CDD SF2_C_RHA 457 682 - -
Bva11g00703 1169 Pfam DEAD/DEAH box helicase 284 436 IPR011545 GO:0003676|GO:0005524
Bva11g00703 1169 MobiDBLite consensus disorder prediction 65 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00703 Bva-Chr11 10083547 10093287 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00703 11 10083547 10093287 Bva11g00703 11 10083547 10093287 ECH