Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00661 ATGGCTCTCCCTCAACTAGCCCGAGCATCAAAAAGAATCACCCACCCATTTATCTTCAATTTCCCAAATCTTCCGCTAGTTTCACCTTCTCCCACTGGCTCTATTAGATCACTTTCCATTTCGCTCATTTCTGTAcaaagttcatttttttattactgttTTGTGTCCAGCAAGCAAAACTCATGTGGGTCTCCAAGAAATCATGCTTTCGGCTTTCACACATTGATTCATGGCGGCACTAAGCAAGCAGAAGCATTTGTCGGAGCCAATGACTTGAACCCAGATGCTGATAATGGTCTAGTTGCAGAAAGAATCTGCAGAACTTTATCAAACAGTCCTAATTCTGATTTCGAGTTGTCTCTCGGTAATCTTTCGGTGAAGGTAACGCCCGAACTTGTGGTTGAGGTCTTGAAGAGGCTGAGCAATGCTGGTGTTCTCGCACTTTCCTTCTTCCGATGGGCTGAGAAGCGAAAGGGGTTCAAATATAGTACAGAAAATTACAATGCGTTGATTGAGGCCCTGGGTAAGATCAAACAATTCAAGATGGTATGGAATTTGGTGGGTGACATGAAGAGTAAGAAGTTGTTGAACAAAGATACTTTTGCATTGGTTGCACGTAGATATGCTAGAGTTAGGAAGGTTAAAGAAGCGGTGGAGACGTTTGAGAAGATGGCAGGGTTTGGGATGGAGCCAGAATTATCagatttcaataaatttatggATACCTTGAGTAAGTCGAAGAATGTTGAGAAAGCACAAGAGCtgtttgataaaatgaaaaagagaaggttCCTCCCTGACGTAAAATCCTACACGATATTGTTAGAAGGGTGGGGTCAACAACAAAATCTATTGAGGCTTAATGAGGTCTACAGGGAGATGAAGGATGAGGGTTTTGAGCCAGATGTTATTACCTATGGCATCATCATCAATGCACATTGTAGGGCTAGGAAATGTGATGAAGCTATTGGGTTCTATCATGAGATGGTAGCAAAGAATGTGAAGCCAAGTCCAaacatattttgtattttgatcAATGGACTGGGTTGTGAGAAAAGGTTAGATGAAGCTCTTCAGTTCTTTGAAAAGTCCAAGGCTAGTGGTTTTGCCTTGGACGCACCCACTTATAATGCTGTTGTGGGGGCTTATTGTTGGTCATTGCAAATGCAAGACGCTTACAGGATGGTTGATGAGATGAAAAAATGTGGTGAGGGTCCAAATTCTCGAACTTTTGATATAATACTTCATCACTTGATAAAGAATGGAAGAACAGAAGAAGCCAACTCGGTTTTCCAGAGAATCAGTAGTGAGCCGGGGTGTGAACCAACATTAAGCACATATGAGATTATGGTGAGGATGTTTTGTAATATAGATCGGCTGGATATGGCGATGAAGGTTTGGGATCAGATGAAGGCAAAGGGAATTCTTCCTGGTATGCACATGTTTTCGACGTTAATTAATGCCTTGTGCCACGAGAGTAAGTTAGATGATGCTTGTAGATTCTTTCAAGAGATGTTAGATATGGGCATTCGTCCTCCTGGGAAAATGTTTAGTAACTTGAAACAGGCTCTACTCGATGAGGGGAGGAAAAATACTGCCTTAATGTTGGCTCAGAAGATTGATAAACTGAGGAAAACTCCATTAATAGGTTG 1652 0.4013 MALPQLARASKRITHPFIFNFPNLPLVSPSPTGSIRSLSISLISVQSSFFYYCFVSSKQNSCGSPRNHAFGFHTLIHGGTKQAEAFVGANDLNPDADNGLVAERICRTLSNSPNSDFELSLGNLSVKVTPELVVEVLKRLSNAGVLALSFFRWAEKRKGFKYSTENYNALIEALGKIKQFKMVWNLVGDMKSKKLLNKDTFALVARRYARVRKVKEAVETFEKMAGFGMEPELSDFNKFMDTLSKSKNVEKAQELFDKMKKRRFLPDVKSYTILLEGWGQQQNLLRLNEVYREMKDEGFEPDVITYGIIINAHCRARKCDEAIGFYHEMVAKNVKPSPNIFCILINGLGCEKRLDEALQFFEKSKASGFALDAPTYNAVVGAYCWSLQMQDAYRMVDEMKKCGEGPNSRTFDIILHHLIKNGRTEEANSVFQRISSEPGCEPTLSTYEIMVRMFCNIDRLDMAMKVWDQMKAKGILPGMHMFSTLINALCHESKLDDACRFFQEMLDMGIRPPGKMFSNLKQALLDEGRKNTALMLAQKIDKLRKTPLIG 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00661 550 Gene3D Tetratricopeptide repeat domain 234 351 IPR011990 GO:0005515
Bva11g00661 550 Gene3D Tetratricopeptide repeat domain 123 233 IPR011990 GO:0005515
Bva11g00661 550 Gene3D Tetratricopeptide repeat domain 352 433 IPR011990 GO:0005515
Bva11g00661 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 102 547 - -
Bva11g00661 550 PANTHER OS01G0505500 PROTEIN 102 547 - -
Bva11g00661 550 Gene3D Tetratricopeptide repeat domain 434 544 IPR011990 GO:0005515
Bva11g00661 550 TIGRFAM PPR: pentatricopeptide repeat domain 446 477 IPR002885 -
Bva11g00661 550 TIGRFAM PPR: pentatricopeptide repeat domain 236 268 IPR002885 -
Bva11g00661 550 TIGRFAM PPR: pentatricopeptide repeat domain 270 303 IPR002885 -
Bva11g00661 550 TIGRFAM PPR: pentatricopeptide repeat domain 481 512 IPR002885 -
Bva11g00661 550 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Bva11g00661 550 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Bva11g00661 550 TIGRFAM PPR: pentatricopeptide repeat domain 340 372 IPR002885 -
Bva11g00661 550 TIGRFAM PPR: pentatricopeptide repeat domain 167 195 IPR002885 -
Bva11g00661 550 TIGRFAM PPR: pentatricopeptide repeat domain 375 407 IPR002885 -
Bva11g00661 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Bva11g00661 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 442 IPR002885 -
Bva11g00661 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Bva11g00661 550 Pfam PPR repeat family 302 348 IPR002885 -
Bva11g00661 550 Pfam PPR repeat family 373 419 IPR002885 -
Bva11g00661 550 Pfam PPR repeat family 236 277 IPR002885 -
Bva11g00661 550 SUPERFAMILY HCP-like 205 377 - -
Bva11g00661 550 Pfam PPR repeat 473 505 IPR002885 -
Bva11g00661 550 Pfam PPR repeat 439 471 IPR002885 -
Bva11g00661 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Bva11g00661 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Bva11g00661 550 Pfam PPR repeat 206 228 IPR002885 -
Bva11g00661 550 Pfam PPR repeat 167 194 IPR002885 -
Bva11g00661 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Bva11g00661 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Bva11g00661 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Bva11g00661 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00661 120 533 Glycosyltransferase AT1G05670 23.093 3.85e-31 126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00661 11 9830885 9834624 Bva11g00661 11 9830885 9834624 ECH