Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00633 ATGGCGGTTCTGCCCAGAAACTCTTCAACCAGCTTGGATTTGTCCATCTCCGTCCCTGGCTTTGCTTCTTCAccatctcttccttcatctgTGAGATCAGAGTTAAGCAGGTTGGACATAAACCAAGTACCCTCAGGCTCAGAAGAAGAATGGATGGCATTAAACATGGAACTTgacattgaagaagaaaacagcaATGGCAATGGAGGCCCTTCCCGTAAGAAACTTCGTCTCACAAAGGAACAGTCTCGTCTTCTCGAAGAAAGCTTCAGACAAAACCACACTTTAAACCCAAAGCAGAAAGAGACTTTGGCAATACAGTTGAAGCTGAGGCCAAGGCAAGTGGAGGTTTGGTTTCAGAACCGTAGGGCAAGGAGCAAGCTGAAGCAGACGGAGATGGAGTGTGAATACCTGAAGAGGTGGTTTGGGTCATTGACGGAGCAGAACAGAAGACTGCAGAGAGAGGTTGAAGAACTAAGGGCCATGAAAGTGGGCCCACCAACCATAATCTCCCCTCACACCTGCCAGCCAATGCCGGCATCAACCCTAACAATGTGCCCTCGATGTGAGAGGGTCACCACCAACAATCCCGACAGGGGACCCACCGGACCACCCACTGCCGCTGCCGCTTTGTCCTCTAAAGTGCCGGCGCCACCCCTCCCATCACATCAGCCTTCGGCGGCTTGTTA 689 0.4877 MAVLPRNSSTSLDLSISVPGFASSPSLPSSVRSELSRLDINQVPSGSEEEWMALNMELDIEEENSNGNGGPSRKKLRLTKEQSRLLEESFRQNHTLNPKQKETLAIQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTIISPHTCQPMPASTLTMCPRCERVTTNNPDRGPTGPPTAAAALSSKVPAPPLPSHQPSAAC 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00633 229 MobiDBLite consensus disorder prediction 190 229 - -
Bva11g00633 229 SMART HOX_1 71 133 IPR001356 GO:0003677
Bva11g00633 229 PANTHER - 6 213 - -
Bva11g00633 229 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Bva11g00633 229 Coils Coil 142 162 - -
Bva11g00633 229 SUPERFAMILY Homeodomain-like 60 130 IPR009057 -
Bva11g00633 229 Pfam Homeodomain 73 127 IPR001356 GO:0003677
Bva11g00633 229 CDD homeodomain 73 130 IPR001356 GO:0003677
Bva11g00633 229 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Bva11g00633 229 Gene3D - 64 137 - -
Bva11g00633 229 SMART halz 129 172 IPR003106 GO:0006355|GO:0043565
Bva11g00633 229 Pfam Homeobox associated leucine zipper 129 163 IPR003106 GO:0006355|GO:0043565
Bva11g00633 229 MobiDBLite consensus disorder prediction 1 29 - -
Bva11g00633 229 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 6 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00633 Bva-Chr11 9662286 9665171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00633 38 193 Homeobox Transcription Factor Family AT1G70920 66.879 2.30e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva11g00633 Homeodomain 3.1e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00633 11 9662286 9665171 Bva11g00633 11 9662286 9665171 ECH