Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00617 ATGCTCTCAAGTATATATCCCACCAAGTTGTTCTTCATCCTCCCTCTCCCACTTTTTCCTTCCATTCTCCAATTCTCTTCTCTCCTTCACACCCTGAGACTCACCAACCAACAAATCTCCCAAACCAAACAGGCCTTTAGCGCGCTCTTGCAATCGTGTTCTTCAAATCCCAACCAACTCAAACAAATCCATGGCCTCCTCCTCACATCAGGGCTCTCCATCAAGAACAGCCTCATCACTCAACTTCTTACAAGCTTCATAGTTTTGGGAGACATGTCATATGCCCGTGCACTGTTCGATGAATTGCATAAACCACGAACGTTCTTATGGAACACCCTGATCAAAGGGTATGTGAAAAATGATCTTCCCATAGAAGCTTCCTCTATTTACAGGCAAATGCACCATCTGGGTGTTCGTCCTGACCCCTTTACGTTTCCGTTTGTGATTAAGGCTTGTGCTGAACTGGCTGAATTATGGGCTGGTTCTGCTGTGCATACCCATGTGGTGAAACATGGGTTGGAATTTGTTGCAATGATTAGGACTGAGCTGATGGTAATGTATGTGAAATTTGGGGAACTGGGTTTTGCTGATTTCTTGTTTAGGACCATGGTTGAGAAAGATTTAGTAGCTTGGAATGCTTTGATTGCAGTATGTGCCCAGAACGGGTATGGCAATAAGGCTCTTGCTCTGTTTCGCCAGATGGGTGCAGCTGATACAAAACCTGATGCAGTGACTTTGGTGAGTGCTCTTTCAGCTTGTGGTCAATTGGGCTGTTCTGAGATTGGGGAGGAAATTCTTGGTATTGCAAGACTAGAAGGAATTCATTGCAATATAATTGTTGATAATGCACGACTAGACATGCATGTAAAATCTGGTAATATTGACATGGCAGCTAAATTGTTTGAGGAAATGCCAAAGAGGAATCTTATTTCATGGAGCACAATGATTGTAGGCTATGCTATTAACGGAGAGAGTGAAAAagcattatctttattttctagGATGCAAAATGAGGGATTGCAACCAAACCATGTTACATATCTGGGAGTTTTATCAGCTTGCAGTCATGGTGGGCTAGTAAGCCAAGGCTGGAGATTTTTCCATCAAATGTCTTGGTCAATGGATAAAGACATCAAACCTAGAAAAGAACACTGTGCTTGCATGGTTGATCTTCTTGGCCGTGCAGGACATCTTGAAGAAGCTTACAACTTGATCAAAAGCATGCCTATTGAGCCAGATGCAGGAATCTGGGGAGCTCTATTGGGTGCCTGTGCTATACACCAAAATGTGGAGTTGGGCCAACATGCAGCAGATTGTCTTTTGGAATTAGCTCCTGATGTTGCTTCATACCATGTTCTGATGTCCAACATGTACGCATCTGCTGGGAGGTGGGATTCTGTTAAAAAAGTGAGGcagaaaatgagaaggaaaGGTGTAAGAAAAATTGCTGCTTATAGCTCAGTTGAGTTAAACGGTGAGTTCCATCTTTTCTATGGAGGAGATAGGTCACACCCACAATCAGATCTCATATACcaaaagttggatgatttatttaaacaaattggGAGTCTAGGCTACAATCCAAAAACCAATTCTGTGTTTCATGATGTGGAATTAGAAGAGAAGGAAGTGACACTTAGAAGTCACAGCGAAAAGCTTGCCATTGCATTTGCTCTTATCAATATAGGGCCAGAAAGCCCCATCAGGGTGATGAAGAATTTGAGAGCATGTGATGACTGCCACACTTTCTCTAAATTTGTCTCTGAAGTTTCATCAAGAGAGATAATTATGAGAGACAAGATTCGTTTTCATCACTTCAGGAATGGAGTTTGCTCCTGCAATGACTACTGGTG 1853 0.4134 MLSSIYPTKLFFILPLPLFPSILQFSSLLHTLRLTNQQISQTKQAFSALLQSCSSNPNQLKQIHGLLLTSGLSIKNSLITQLLTSFIVLGDMSYARALFDELHKPRTFLWNTLIKGYVKNDLPIEASSIYRQMHHLGVRPDPFTFPFVIKACAELAELWAGSAVHTHVVKHGLEFVAMIRTELMVMYVKFGELGFADFLFRTMVEKDLVAWNALIAVCAQNGYGNKALALFRQMGAADTKPDAVTLVSALSACGQLGCSEIGEEILGIARLEGIHCNIIVDNARLDMHVKSGNIDMAAKLFEEMPKRNLISWSTMIVGYAINGESEKALSLFSRMQNEGLQPNHVTYLGVLSACSHGGLVSQGWRFFHQMSWSMDKDIKPRKEHCACMVDLLGRAGHLEEAYNLIKSMPIEPDAGIWGALLGACAIHQNVELGQHAADCLLELAPDVASYHVLMSNMYASAGRWDSVKKVRQKMRRKGVRKIAAYSSVELNGEFHLFYGGDRSHPQSDLIYQKLDDLFKQIGSLGYNPKTNSVFHDVELEEKEVTLRSHSEKLAIAFALINIGPESPIRVMKNLRACDDCHTFSKFVSEVSSREIIMRDKIRFHHFRNGVCSCNDYW 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00617 617 Pfam PPR repeat family 105 153 IPR002885 -
Bva11g00617 617 Pfam PPR repeat family 206 253 IPR002885 -
Bva11g00617 617 Pfam PPR repeat family 308 355 IPR002885 -
Bva11g00617 617 Pfam E+ motif 497 521 IPR046849 -
Bva11g00617 617 PANTHER BNAC07G48870D PROTEIN 39 610 - -
Bva11g00617 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Bva11g00617 617 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 39 610 - -
Bva11g00617 617 TIGRFAM PPR: pentatricopeptide repeat domain 310 343 IPR002885 -
Bva11g00617 617 TIGRFAM PPR: pentatricopeptide repeat domain 109 141 IPR002885 -
Bva11g00617 617 TIGRFAM PPR: pentatricopeptide repeat domain 209 243 IPR002885 -
Bva11g00617 617 Pfam PPR repeat 387 408 IPR002885 -
Bva11g00617 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Bva11g00617 617 Gene3D Tetratricopeptide repeat domain 26 169 IPR011990 GO:0005515
Bva11g00617 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Bva11g00617 617 Pfam DYW family of nucleic acid deaminases 525 617 IPR032867 GO:0008270
Bva11g00617 617 Gene3D Tetratricopeptide repeat domain 374 496 IPR011990 GO:0005515
Bva11g00617 617 Gene3D Tetratricopeptide repeat domain 263 373 IPR011990 GO:0005515
Bva11g00617 617 Pfam E motif 427 489 IPR046848 -
Bva11g00617 617 Gene3D Tetratricopeptide repeat domain 170 262 IPR011990 GO:0005515
Bva11g00617 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 481 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00617 Bva-Chr11 9555027 9557688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00617 43 617 Glycoside Hydrolase AT3G49170 39.145 1.11e-136 418
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00617 11 9555027 9557688 Bva11g00617 11 9555027 9557688 ECH