Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00596 ATGGACAAGAATTTGTTGACCTATTCCTGTTGCATTGCCTATCTTTTAGTTTATTCTCTCATGGTTGTGCATGGAGATGAAATTCCAAGATCATGCAGCCAAACCCCACATCCTCATGTGTGCAACCATTACATGGGAGCTGCTAATAGATTACAACCAACCCAtgatgtttcttcttcttattcttatttttccttccATGATTTGGCCCTTAGGGTTACCATGGATCAAGCCATTGAAGCACACAAGCTGGTGTCAATCATGAAATTGGATAATTTCAAGAATAAGTATGCGAAATTGGCTTGGAAAGATTGTTTGAAGCTCTATGAGGACACGGTGAACAAACTCAACCGTTCAATGAGTTCAAACAATCCAATTGATAGGTTAACTTGGCTAAGTGCTTCCATTGCCAACCAACAAACTTGCCAAATTGGTTTCCATGACTTCAACCTTTCTTCCCACTTGAACCACTTCCCAAACATGTTAACCAACTTCTCCAAACTGATTAGCAATTCATTAGCCATAAACAATGCTATGGCTTCagcttcatcatcatcttccttgatgaacaagaaacaaaatggtaGTGGAAGAAGGTTATTGCTCTCTGAAGATGGATTCCCCGAATGGTTATCAGCTTCAGATAGAAAGCTTCTTCAGGCAACAAGGGAGGGTCCCAAAGCTGATATAGTGGTGGCACAAGATGGAAGTGGGAATTATAAGACCATTTCAGAGGGTATTGCTGCAGCTTCAAAGCATGGTGGTAGAAGAGTTGTGGTGTACGTGAAAGCTGGTgtttacaaagaaaatgttgTAGTTAAGAAGTCTGTGAAAAATGTGATGATTGTTGGAGATGGGATTGATGCAACTATTGTTACGGGAAGCAAGAGTGCTCAAGTAACCACCACTTTTCGTTCGGCTACTTTTGGGGTTTCCGGTGACGGCTTCATCGCCAGAGACATCACCTTTGAGAACACCGCCGGACCGCAGAAGCACCAAGCGGTGGCTCTCCGCTCCGGCTCCGACCACTCAGTGTTCTACCGATGCAGCTTCAAAGGGTACCAAGACACCTTGTACGTCTACTCCCAACGCCAATTCTACCGTGAATGTGATATCCACGGCACCGTTGACTTCATCTTCGGCGATGCCGTGGCCGTGTTGCAGAGCTGCAACATCTACGTCAGAAAACCGATGAGCAACCAGCAGAACACGGTGACGGCTCAGGGAAGAGAAGACCCAAATGAGAACACAGGCATTATAATCCATAACTCACGTATAATAGGTTCTGCAGGGTTAGGTTCAACGAAAACCTTTCTGGGTCGGCCATGGAAGAAGTATTCAAGGACCGTGGTGATGAAAAGTTCCCTAGACGGGTCGGTTAACCCGGCCGGGTGGAAGGAATGGAGTGGAAGttttgctttgagcactctctATTATGGTGAGTATATGAATTCAGGGCCTGGAGCTGATACTTCAAGGAGGGTGAGGTGGCCAGGGTTTCATGTCATCACTAGTCCATCTGAGGCTGGGAAGTTTACCGTTGGGAATTTCTTGGTCGGAGACTCGTGGATTCCCGCCACCGGTGTCCCGTTTGATGCCGGATTGTG 1607 0.4331 MDKNLLTYSCCIAYLLVYSLMVVHGDEIPRSCSQTPHPHVCNHYMGAANRLQPTHDVSSSYSYFSFHDLALRVTMDQAIEAHKLVSIMKLDNFKNKYAKLAWKDCLKLYEDTVNKLNRSMSSNNPIDRLTWLSASIANQQTCQIGFHDFNLSSHLNHFPNMLTNFSKLISNSLAINNAMASASSSSSLMNKKQNGSGRRLLLSEDGFPEWLSASDRKLLQATREGPKADIVVAQDGSGNYKTISEGIAAASKHGGRRVVVYVKAGVYKENVVVKKSVKNVMIVGDGIDATIVTGSKSAQVTTTFRSATFGVSGDGFIARDITFENTAGPQKHQAVALRSGSDHSVFYRCSFKGYQDTLYVYSQRQFYRECDIHGTVDFIFGDAVAVLQSCNIYVRKPMSNQQNTVTAQGREDPNENTGIIIHNSRIIGSAGLGSTKTFLGRPWKKYSRTVVMKSSLDGSVNPAGWKEWSGSFALSTLYYGEYMNSGPGADTSRRVRWPGFHVITSPSEAGKFTVGNFLVGDSWIPATGVPFDAGL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00596 535 Pfam Pectinesterase 229 521 IPR000070 GO:0030599|GO:0042545
Bva11g00596 535 SMART PMEI_2 23 175 IPR006501 GO:0004857
Bva11g00596 535 ProSitePatterns Pectinesterase signature 1. 254 273 IPR018040 -
Bva11g00596 535 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 23 534 - -
Bva11g00596 535 CDD PMEI-like_3 31 179 - -
Bva11g00596 535 PANTHER PECTINESTERASE 23 534 - -
Bva11g00596 535 Gene3D - 225 535 IPR012334 -
Bva11g00596 535 TIGRFAM PME_inhib: pectinesterase inhibitor domain 15 179 IPR006501 GO:0004857
Bva11g00596 535 Pfam Plant invertase/pectin methylesterase inhibitor 28 175 IPR006501 GO:0004857
Bva11g00596 535 SUPERFAMILY Pectin lyase-like 225 534 IPR011050 -
Bva11g00596 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 179 IPR035513 -
Bva11g00596 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 180 IPR035513 -
Bva11g00596 535 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00596 Bva-Chr11 9393816 9396692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00596 3 535 Carbohydrate Esterase AT1G23200 55.135 0.0 569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00596 11 9393816 9396692 Bva11g00596 11 9393816 9396692 ECH