Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00470 ATGATATATAATAGAGATTCTTCTGGTTCTGGTTCTGCTCCACCATCTCCAGATGCCTTGGCTTCCTCTGAAAATGGGGTgtgtaacaaaagaaaacgaaGACCAGCAGGCACACCAGATCCAGATGCTGAGGTTGTGTCTCTTTCGCCCAGGACCCTTTTGGAATCTGATCGATATGTGTGTGAGATCTGCAACCAAGGGTTTCAAAGGGATCAGAATCTTCAGATGCATAGGAGAAGGCATAAGGTGCCATGGAAATTGCTGAAGAGGGAAACACAAGAGGCGAAGAAGAAGGTTTTTGTCTGCCCTGAGCCAAGCTGTTTGCACCATGACCCTTGCCATGCTCTTGGTGATCTTGTTGGGATCAAGAAGCACTTCAGAAGAAAGCATAGCAATCAGAAGCAGTGGGTTTGTGACAAGTGTTCTAAAGGATATGCTGTTCAATCTGATTACAAAGCACATCTCAAAACCTGTGGAACAAGAGGCCATTCCTGTGACTGTGGCCGTGTTTTTTCCAGGGTGGAGAGCTTCATTGAACATCAAGATGAGTGCACCGTCCGGCAGTTCCGGCCAGAGTTACCGGTGGTGCAGCCGGCGTTCTATTCACGAACAGCTTCAAGCACATGTCcatctaattataataatcaacCTGTGTTGCTAACCCAAGAGATCatacacaaaaataacaagaagcCCTGCACTTATGATCATCAGCAACATCGTAATTTGGAGCTTCAGCTCTTGCCATCATCAAATGCTAAGGTGAGAAGAAATTCTGAGGACAACTACGAAACACATTTGAAACTCTCAATAGGTAGTGATGAATGGAATGTGAATGAACCCAGATTGGAAGTAGCAAAGTTGAAAGAGTTTACTAGTGAGGAGCTCAAGTTGGCCATGGCCGAAAAAGCTTACGCAGAAGAGGCAAGAAGAGAAGCTAAGCGTCAAATTGAGATAGCTGAAGTTGAGTTTGCCAATGCTAAAAGGATAAGGAAACAAGCACAAGCTGAACTAGAGAAAGCTGAAGCCTTGAAAATGCAAGCAATGAAGAAGATGAGCTCTACCCTTATGCAAATAACTTGTCAAGTTTGCAAGCAACAGTTTCAGTCTTCAATTGCACATGGGGTTCCATCTGAAGAGACTTCTCTTGTAACCAGCTATATGTCCTCACCCACCACAGAAGGGGAAGGAGAGTG 1196 0.4306 MIYNRDSSGSGSAPPSPDALASSENGVCNKRKRRPAGTPDPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEAKKKVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDECTVRQFRPELPVVQPAFYSRTASSTCPSNYNNQPVLLTQEIIHKNNKKPCTYDHQQHRNLELQLLPSSNAKVRRNSEDNYETHLKLSIGSDEWNVNEPRLEVAKLKEFTSEELKLAMAEKAYAEEARREAKRQIEIAEVEFANAKRIRKQAQAELEKAEALKMQAMKKMSSTLMQITCQVCKQQFQSSIAHGVPSEETSLVTSYMSSPTTEGEGE 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00470 398 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 8 398 - -
Bva11g00470 398 MobiDBLite consensus disorder prediction 379 398 - -
Bva11g00470 398 Coils Coil 296 351 - -
Bva11g00470 398 Gene3D Classic Zinc Finger 121 192 - -
Bva11g00470 398 MobiDBLite consensus disorder prediction 1 23 - -
Bva11g00470 398 MobiDBLite consensus disorder prediction 1 45 - -
Bva11g00470 398 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Bva11g00470 398 Gene3D Classic Zinc Finger 36 104 - -
Bva11g00470 398 Pfam Zinc finger, C2H2 type 59 81 IPR013087 -
Bva11g00470 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Bva11g00470 398 SMART c2h2final6 100 130 IPR013087 -
Bva11g00470 398 SMART c2h2final6 59 81 IPR013087 -
Bva11g00470 398 SMART c2h2final6 136 163 IPR013087 -
Bva11g00470 398 SUPERFAMILY beta-beta-alpha zinc fingers 58 156 IPR036236 -
Bva11g00470 398 PANTHER OS03G0310200 PROTEIN 8 398 IPR039288 GO:0009630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00470 Bva-Chr11 8386392 8389081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00470 24 398 C2H2 Transcription Factor Family AT2G01940 57.210 1.21e-152 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva11g00470 zf-C2H2 0.0036 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00470 11 8386392 8389081 Bva11g00470 11 8386392 8389081 ECH