LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g00451	ATGACTGAGATGAATGTTCAGTGGAAAGTGGAGCTTCGATTTGGCTGGTTGCGTATATTCTCTGACACATTTTCTGCACTCTGCcgtatgattttgatttttcacgCACAACAAGAAAGTGCGGCTTTTTCTTACACGCCACTCGAGGAGATTGGAAGGGAAGGTAGAGTGGTTTCTGAAGAAAATATGGGTTCCGTTGAGGATGATGTATCGGTTGTGGAAGAGGGTCTTCTGCAGGATGAAAGGAGCAAAGAATACACAGGAGATGGCTCAGTTGATTTTAAAGGGATGCCTGCTCGTAAGAACAATACTGGCAATTGGAGAGCTTGTCCATTTATTCTAGGCAATGAATGTTGTGAACGTTTGGCTTACTATGGCATTGCTACAAATCTTGTCACCTATCTGACAAACAAATTGCATGAAGGAAACGTCTCTGCTGCAAGAAATGTCACCACCTGGCAAGGCACTTGTTATCTTACGCCTCTCATTGGAGCTGTCTTAGCAGATGCTTACTGGGGAAGATACTGGACAATTGCTGGTTTCTCCACGATATATTTCATTGGAATGTGTACATTGTCTCTTTCTGCAACCATTCCTGCTTTTAAGCCATCTGAATGTGTGGGTTCTATATGCCCCTCAGCTACTCCTGTACAATATGCtgtgtttttctttggtcTCTACTTGATTGCACTTGGGACTGGTGGGATAAAGCCGTGTGTCTCATCTTTTGGGGCAGATCAGTTTGATGATACTGATCCCAAGGAACGGGTTAAGAAGGGATCCTTTTTCAACTggttttacttttctattaaCATAGGTGCCCTTGTATCAAGCAGTTTAATTGTATGGATTCAAGACAATGCAGGGTGGGGTCTTGGATTTGGTATTCCTGCTTTGTTCATGGGCTTGGCTATTGGAAGTTTCTTTTTGGGCACACCCCTGTACAGGTTTCAAAAACCAGGGGGAAGCCCCGTTACAAGAATGTGCCAGGTTGTGGTAGCTTCTTTCCGGAAGCGGAATCTACATGTCCCTGAGGATAGTAGTCTCCTGTACGAGACACCGGACAAGAGCTCTGCTATTGAAGGAAGTAGGAAACTGGAGCATAGCAATGAATTGAcGTGTCTTGATAAAGCAGCTGTGGTCTCTGATAAGGAGAACAAAACTGGTAACTACTTGAGTTCTCTCATTCTGACAGTGGTAACTTACTTCACCACGCGCGGTGGACATGCTGGATGGATTACAGACAACTTGAATGCAGGTCATCTTGATTACTTTTTCTGGCTGTTGGCTGGACTTAGCTTCTTGAATTTGTTGGTGTACATAGTCTGTGCCAAAAGGTACAAGCAGAAGAAAGCCtctta	1361	0.4254	MTEMNVQWKVELRFGWLRIFSDTFSALCRMILIFHAQQESAAFSYTPLEEIGREGRVVSEENMGSVEDDVSVVEEGLLQDERSKEYTGDGSVDFKGMPARKNNTGNWRACPFILGNECCERLAYYGIATNLVTYLTNKLHEGNVSAARNVTTWQGTCYLTPLIGAVLADAYWGRYWTIAGFSTIYFIGMCTLSLSATIPAFKPSECVGSICPSATPVQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDPKERVKKGSFFNWFYFSINIGALVSSSLIVWIQDNAGWGLGFGIPALFMGLAIGSFFLGTPLYRFQKPGGSPVTRMCQVVVASFRKRNLHVPEDSSLLYETPDKSSAIEGSRKLEHSNELTCLDKAAVVSDKENKTGNYLSSLILTVVTYFTTRGGHAGWITDNLNAGHLDYFFWLLAGLSFLNLLVYIVCAKRYKQKKAS	453

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva11g00451	453	Pfam	POT family	175	393	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Bva11g00451	453	ProSitePatterns	PTR2 family proton/oligopeptide symporters signature 1.	164	188	IPR018456	GO:0006857\|GO:0016020\|GO:0022857
	Bva11g00451	453	PANTHER	BNAC09G20910D PROTEIN	386	452	-	-
	Bva11g00451	453	SUPERFAMILY	MFS general substrate transporter	96	317	IPR036259	-
	Bva11g00451	453	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	85	389	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Bva11g00451	453	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	386	452	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Bva11g00451	453	PANTHER	BNAC09G20910D PROTEIN	85	389	-	-
	Bva11g00451	453	ProSitePatterns	PTR2 family proton/oligopeptide symporters signature 2.	263	275	IPR018456	GO:0006857\|GO:0016020\|GO:0022857
	Bva11g00451	453	Gene3D	MFS general substrate transporter like domains	78	382	IPR036259	-
	Bva11g00451	453	Gene3D	MFS general substrate transporter like domains	386	453	IPR036259	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g00451	Bva-Chr11	8199772	8211383	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva11g00451	386	453	Organic Solute Cotransporters	AT2G02040	76.471	4.46e-27	112

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva11g00451	11	8199772	8211383	Bva11g00451	11	8199772	8211383	ECH