Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00904 ATGGGAGTGCCAGCTTTCTATAGGTGGTTGGCGGAGAAGTATCCGCTAGTGGTGGTAGATGTGATCGAGGAAGAGCCAGTCGTCATTGACGGCATTCCAATTCCGGTGGATACCAGTAAGAAGAATCCTAACAACATCGAGTACGATAACCTCTACCTCGACATGAATGGGATCATTCACCCCTGCTTCCACCCCGAGGATAGACCATCTCCAACCACCTTCGATGAGGTTTTCCAGTGCATATTTGACTACATTGACAGACTATTTGTCATGGTGCGGCCTAGGAAGCTATTATATATGGCCATAGATGGTGTTGCCCCAAGGGCTAAAATGAATCAACAACGGTCTAGACGGTTTAGATCAGCAAAAGATGCATCAGAAGCTGCAGCTGAAGAGGCAAGGTTAAGGGAGGAATTTGAGAGGGAGGGCAGAAAGCTTCCTCCAAAAGAGGAATCCCAGGTGTTTGATTCAAATATTATCACACCCGGAACTGACTTCATGGCTGTTTTATCCATTGCACTTCAGTACTACATTCATCTTAGATTGAACAATGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCTTATATTCGTCTTCAGAGAAATCTTAGTGGTTATGATCCAAATACCCGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGGTTTGGCTACCCATGAAGTTCATTTCTCAATTCTGAGAGAGGTCGTATTTACTCCTGGACAAGACAAATGCTTCCTATGTGGTCAGATGGGTCATGTGGCTGCAGACTGTGAAGGAAAGGCGAAAAGGAAAGCAGGAGAGTTTGATGAAAAAGGTGATGCTGTAGTGGCCAAAAAGCCCTTTCAGTTCTTGAACATTTGGACTCTAAGGGAATATTTGGAATACGATATGAAGATACCAAATTCTCCTCTCGAGATTGATTTTGAACGCATTGTGGATGATTTTATCTTCATGTGTTTCTTTGTTGGCAATGATTTCTTACCTCATATGCCCACACTAGAGATTCGTGAgGGGGCAATCAACCTACTGTTGGCGGTATATAAGAAGGAATTTAGAGCACTGGGGGGTTATCTTACTGATGGAAGTCAGCCAAATTTGAGTAGGGTGGAGCATTTTATTCAGGCTGTTGGATcttttgaagataaaatattccAGAAAAGAGCTCGATTACACCAGCGACAAGCAGAAAGGATAAAGCGCGAGAAGGCACAAGCAAGAAGAGGAGATGATGCTGAGCCTCTAGTTCGGCCAGAGTCTTTGGTTGCAGTTTCGCGATTCCATGGTTCTCGTCTTGCTTCTGCTCCTTCACCTTCACCTTATCAAAAATCTGGGTCAAGTTATGATCCAAATGTCTCAAAGTCAGTTATGAAAGAACACCACGCTGTACTTGCCACAAGTGAATTTTCTGGTCTTGAAATCAAAGGGAAGCCTCCTAGGGCAACTAATCATAAAGAGGCCTCTGAGCGGCCCCATAAAGTTGCTAGGTTATCTTCAGGGGCAACTATTGGTGCTGCTATTGTTGAAGCTGAGAATAGTCTTGAAATAGATgCTCAAGATAACAAAGatgaattaaaatcaaaacttaagGAGATACTTCGGGAAAAATCTGATGCATTCAACTCAAAAAATCCAGAAGAGGACAAGGTTAAGTTGGGAGATCCTGGCTGGAAAGAAAGATATTATGAGGAAAAATTTTCTGCTAAAACTCCTGAGGAACTTGAAACAATACGGAAAGATGTTGTGGCCAAATACACTGAAGGCCTGTGTTGGGTTATGCACTATTATTATGAAGGTGTTTGTTCTTGGCAGTGgTTTTATCCGTATCATTACGCTCCCTTTGCATCTGATCTCAAGGGCCTCGGTGAactgaatataaaatttaagctgGGTACCCCATTCAAACCATTTGACCAGCTACTAGGGGTTTTCCCTGCTGCAAGTTCCCATGCACTTCCTGAGCCATATAGGGAACTGATGACTGATCCAAATTCTCCAATCATTGATTTTTATCCAATTGATTTTGAAGTGGACATGAATGGTAAACGCTATGCTTGGCAGGGTATTGCAAAATTGCCTTTCATTGATGAAGAACGTCTTCTCTTAGAAGTTAGAAAAATTGAACACATGTTAACGGCAGAGGAAGTACGAAGAAACAGTATCATGTTTGACCTGCTTTTTGTGAATTCTTGTCATCCACTCTCTGCGTGCATAAGTACACTTGACAACAAATGTAAAAACATGTCAGTCAGAGAACGTGCTGAGGTCAAGGAACGAATCAATCCTAAAGAAAGGGCTACATGCAGTGGTGGAATGAACGGTTACATATCATTATGTGGTGGAGAACCTTGCCCACCTATATTCAGGTCGCCTGTTGAAGGCATGGAAGACATTACAGATAACCATGTGATATGTGCAATCTATAGACTTCCAGATGCACATAAACACATTACTCGGCCACCTCAAGGAGTTAAATATCCCAAGAAGATTGTGACGATTGGAGATCTGAAACCTGACCCCGTCTTGTGGCATGAAGATTCTGGGAGGAGACACATCCAAAATAGgCAAAACCCTCCAGGAGCTTTATCTGGTCGGCAGCTTGGGGAGGCTGCACACCGACTTCTTGTTAATTCATTACAGGTGAAGGTAGATTCTAATGGATATGGCAATAATGGACCACCACACAATTACGTAGCGCCAATGGGTCATCCCCAACCATTTCCTTCTTACCAAAACTATGAATCCAACCCGGGATACCTTGTAATGCCTCCACTAATGCCAGTTCCTCCCCACCAAGGCCACCctcaattttcatcttttgctGTTAGACCTAGTCAGCAGTATGGTTATGATCAACCATACTCTCCTCAGGTGTATTATCCTCATCAATCAAATTCTTTTGAAAGGAATAACAATCCACGGCCTCAGACTCATTCTTACGGAAGACATAATTCCTCAGCTGCTCATGGTAGTGGAGGAAGTGATAGGCATGGATACCAACCAACGGGAAATAATCAGAGTGCCAGGTGGGTGAATGCACAAGGAAATACGCCAGGAATTTTTTCTAGCGATCCTTATGAAGCCAGAAATCCCCATAGCCAGAACTACCAATCATCTGGAGCTTCTAGTCATCACCAGATGAACCATAGCCGGGCTACTCGGACTAACCCGAGTGTTTCTAGAAATTATGGCCGCCCACCAAATACTGCGAACCAATATtctttattagataaaagatCAAACAGGAGGCCGCAACCACCACCTGGATATGGCCGTGAATA 3335 0.4228 MGVPAFYRWLAEKYPLVVVDVIEEEPVVIDGIPIPVDTSKKNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTTFDEVFQCIFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRSAKDASEAAAEEARLREEFEREGRKLPPKEESQVFDSNIITPGTDFMAVLSIALQYYIHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLSGYDPNTRHCLYGLDADLIMLGLATHEVHFSILREVVFTPGQDKCFLCGQMGHVAADCEGKAKRKAGEFDEKGDAVVAKKPFQFLNIWTLREYLEYDMKIPNSPLEIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRALGGYLTDGSQPNLSRVEHFIQAVGSFEDKIFQKRARLHQRQAERIKREKAQARRGDDAEPLVRPESLVAVSRFHGSRLASAPSPSPYQKSGSSYDPNVSKSVMKEHHAVLATSEFSGLEIKGKPPRATNHKEASERPHKVARLSSGATIGAAIVEAENSLEIDAQDNKDELKSKLKEILREKSDAFNSKNPEEDKVKLGDPGWKERYYEEKFSAKTPEELETIRKDVVAKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKGLGELNIKFKLGTPFKPFDQLLGVFPAASSHALPEPYRELMTDPNSPIIDFYPIDFEVDMNGKRYAWQGIAKLPFIDEERLLLEVRKIEHMLTAEEVRRNSIMFDLLFVNSCHPLSACISTLDNKCKNMSVRERAEVKERINPKERATCSGGMNGYISLCGGEPCPPIFRSPVEGMEDITDNHVICAIYRLPDAHKHITRPPQGVKYPKKIVTIGDLKPDPVLWHEDSGRRHIQNRQNPPGALSGRQLGEAAHRLLVNSLQVKVDSNGYGNNGPPHNYVAPMGHPQPFPSYQNYESNPGYLVMPPLMPVPPHQGHPQFSSFAVRPSQQYGYDQPYSPQVYYPHQSNSFERNNNPRPQTHSYGRHNSSAAHGSGGSDRHGYQPTGNNQSARWVNAQGNTPGIFSSDPYEARNPHSQNYQSSGASSHHQMNHSRATRTNPSVSRNYGRPPNTANQYSLLDKRSNRRPQPPPGYGRE 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00904 1111 Coils Coil 407 427 - -
Bva10g00904 1111 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Bva10g00904 1111 MobiDBLite consensus disorder prediction 117 151 - -
Bva10g00904 1111 MobiDBLite consensus disorder prediction 496 511 - -
Bva10g00904 1111 MobiDBLite consensus disorder prediction 413 433 - -
Bva10g00904 1111 Coils Coil 122 142 - -
Bva10g00904 1111 PIRSF Exonuclease_Xrn2 1 1106 IPR017151 GO:0004534|GO:0005634|GO:0006139
Bva10g00904 1111 MobiDBLite consensus disorder prediction 964 1097 - -
Bva10g00904 1111 MobiDBLite consensus disorder prediction 449 470 - -
Bva10g00904 1111 CDD PIN_XRN1-2-like 51 312 - -
Bva10g00904 1111 Pfam Xrn1 helical domain 325 853 IPR041412 -
Bva10g00904 1111 Coils Coil 533 560 - -
Bva10g00904 1111 PANTHER 5'->3' EXORIBONUCLEASE 1 1037 IPR027073 -
Bva10g00904 1111 Gene3D - 1 143 - -
Bva10g00904 1111 Gene3D - 148 373 - -
Bva10g00904 1111 PANTHER 5'-3' EXORIBONUCLEASE 1 1037 - -
Bva10g00904 1111 MobiDBLite consensus disorder prediction 964 1111 - -
Bva10g00904 1111 MobiDBLite consensus disorder prediction 113 151 - -
Bva10g00904 1111 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Bva10g00904 1111 Gene3D - 643 739 - -
Bva10g00904 1111 MobiDBLite consensus disorder prediction 453 470 - -
Bva10g00904 1111 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Bva10g00904 1111 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Bva10g00904 1111 MobiDBLite consensus disorder prediction 491 512 - -
Bva10g00904 1111 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00904 Bva-Chr10 6869888 6879614 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00904 10 6869888 6879614 Bva10g00904 10 6869888 6879614 ECH