Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00899 ATGATGGCCTCCGTGGAAGAAAAGATTAGAACAGGAGGATTAATTGTTGGGGGTCAAACTCTTGTTTCGGAGATGAAGCTCCTGAAGGAAATGCAGGATCAATCTGGAATCCAAAAGAGTATAAATTCCGAGTTATGGCATGCTTGCGCGGGGCCTCTTGTTTCCTTGCCTCAGGTGGGGAGTCTTGTCTATTACTTCCCTCAGGGACACAGCGAGCAGgtGGCAGCTTCCACTAGAAGAACGGCAACATCGCAGATTCCTAATTATCCGAATCTTGCATCTCAGTTGCTCTGCCAAGTTCAAAGTGTTACGCTTCATGCAGACAAAGATACAGACGAAATCTACGCTCAAATGAGTCTCCAACCGCTGAATTCTGAAAACGACATGTTTCCTATGTCTGAGTTTGGGCTGAAGCCCAGTAAACATCCAAGTGAATTTTTCTGCAAAACTTTAACTGCTAGTGACACAAGCACGCATGGTGGATTTTCAGTACCACGCCGGGCAGCGGAAAAGCTCTTTCCTTCATTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTAGTCCGAGACTTGCATGATAATACCTGGACATTTCGGCATATATACCGCGGCCAGCCGAAGAGACACCTCCTCACGACGGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAAGGCAGGTGATGCTGTTCTTTTCATCAGGGATGAGAAGTCGCAATTGCTAGTTGGTGTTCGGCGTGCGAATCGTCAGCAGACAACATTGCCATCATCAGTTCTTAGTGCCGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGGATCCCATTCACTGTTTTCTACAATCCAAGGGCATGTCCTTCAGAATTTGTTATTCCATTGGCAAAATACAGAAAAGCTGTATTTGGGACTCAACTCTCGGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCCGGTAAGCGAAGATATATGGGTACAATAGTTGGTATCAGTGACCTGGATCCTTTGAGGTGGCCTGGCTCTAAGTGGCGAAATGTTCAGGTAGAGTGGGATGAGCCTGGTTGTGGCGATAAGCAAAATAGAGTTAGTCCGTGGGAAATTGAGACTCCTGAAAGTCTTTTTATCTTTCCTTCTTTGACTTCAAGTTTGAAGCGACCATTACAATCAGGATTTTTAGGTTCAGAAAATGAGTGGGGGACATTGCTAAGAAGACCTTTTATGCGAGTTCCCGAAAATGGATATGTGGATCTCTCCAACTCCATATCAAATCTCTACTCGGAACACCTAATGaagattctttttaaatcTCAACTGGGCAACAGTCCTGTTACAGTTTCACCACTCATGCAACAAGATAGTGCTGCCAAGAGAGATCCCTTCCAAGATGTGAATGCAACATTGGCAACAGATAACCAAAAAGTTCATGTTGCTTGTTCAGAGACCATGCCACTAAAAAATCTACATTGTtctcaatctttgcaagaccaATCTAACGCCTTGAACTCGCATTCAACATTGCATCCTCCGCCAAAAGTTGATAATCCTCCTCCTTCAGGAACAGTTATTAATAGGTCAAAAGTGGAATCTGACGTTTTAGATGCTGATACTACTGAATTCCCTTCAATGGAAAAAGTTACTGCAAATCCTCAATGTGTAGCAAGCCAGTTGGCAGTCCAGAACCCATGGAGCATGCAGCCGCCTCAGTTGGAATCATCCGTGTCCCAGTCACTAGTGGCTGATGTGGCACCGCAGTACGATTCTGCCATTCTAAACAGCCTATTTCCTCCCCTAGACGTTGATGAGTGGATGGTGAATTCTTCTAGTCAATGTTTCTCTGGGATAAACAGATTACCTGTCTCAGCTTTGCAAGAACAGTCTATGCTTCTACCTCAAGTTGTTAATCCTCCTTTACCTTTACCTTTGACAAACCAAGAAATGTGGGATCATTATCTGAGGAATATAAAGTTGTTACCGCAAGCAGACCAGCAAGGGTTATATGGCCTTAATTGTATATCTAGTTCAAGCAACTTGAACGATCTGTCAGACGAGAGCAATAATCAAAGTGGGGTGTACACTAGTGTTACTGTGGATGCCAGTAACAGCGGAAGCACCATGGTTGATCCTTCTACTTCAAGCACCATTTTAGATGAATTTGGTGCCTTGAAAGAAGCTGATTTTCAGAACCCATCAGACTGCATGATGGGTAACTTGAGTTCAAGTCAGGATGTCCAGTCTCAGATAACTACAGCAAGTTTGGCGGAGTCGCATGCCTTTTCGCTGCAAGACTTCCCTGACAACTCAGGTGGAACGTCTTCAAGCCATGTTGATTTTGAGGAACCCACCTTTCTGCCCAATAACTCATGGCAGCAAGTCCCCGCCGCGCCCATGCGAACCTATACCAAGGTTCAAAAGGCAGGATCTGTTGGAAGATCAATTGATGTGACTACTTTTAAGAATTACGAGGAACTGATAGCTGCGATTGAATGCATGTTTGGTCTTGAGGGTCTGCTGAATGACACTAGAGGTTCGGGATGGAAATTGGTATATGTAGATTACGAGAACGATGTGCTACTTGTTGGGGACGATCCTTGGGAAGAATTTGTTGGGTGCGTGCGATGTATCAGAATTTTATCACCTTCAGAAGTTCAACAGATGAGCGAAGAGGGAATGAAGCTTCTCAACAGTGCTGCGGTGCAAGGAATGAATGGCTCAATATCCGGTGGTTGTGCTTG 2759 0.4426 MMASVEEKIRTGGLIVGGQTLVSEMKLLKEMQDQSGIQKSINSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLASQLLCQVQSVTLHADKDTDEIYAQMSLQPLNSENDMFPMSEFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPSLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRIPFTVFYNPRACPSEFVIPLAKYRKAVFGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNVQVEWDEPGCGDKQNRVSPWEIETPESLFIFPSLTSSLKRPLQSGFLGSENEWGTLLRRPFMRVPENGYVDLSNSISNLYSEHLMKILFKSQLGNSPVTVSPLMQQDSAAKRDPFQDVNATLATDNQKVHVACSETMPLKNLHCSQSLQDQSNALNSHSTLHPPPKVDNPPPSGTVINRSKVESDVLDADTTEFPSMEKVTANPQCVASQLAVQNPWSMQPPQLESSVSQSLVADVAPQYDSAILNSLFPPLDVDEWMVNSSSQCFSGINRLPVSALQEQSMLLPQVVNPPLPLPLTNQEMWDHYLRNIKLLPQADQQGLYGLNCISSSSNLNDLSDESNNQSGVYTSVTVDASNSGSTMVDPSTSSTILDEFGALKEADFQNPSDCMMGNLSSSQDVQSQITTASLAESHAFSLQDFPDNSGGTSSSHVDFEEPTFLPNNSWQQVPAAPMRTYTKVQKAGSVGRSIDVTTFKNYEELIAAIECMFGLEGLLNDTRGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSAAVQGMNGSISGGCA 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00899 919 SUPERFAMILY CAD & PB1 domains 819 885 - -
Bva10g00899 919 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Bva10g00899 919 MobiDBLite consensus disorder prediction 506 532 - -
Bva10g00899 919 Pfam Auxin response factor 273 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva10g00899 919 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Bva10g00899 919 ProSiteProfiles PB1 domain profile. 806 890 IPR000270 GO:0005515
Bva10g00899 919 PANTHER AUXIN RESPONSE FACTOR 5 28 910 - -
Bva10g00899 919 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 910 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva10g00899 919 Gene3D - 802 895 - -
Bva10g00899 919 SUPERFAMILY DNA-binding pseudobarrel domain 136 276 IPR015300 -
Bva10g00899 919 Pfam AUX/IAA family 803 893 IPR033389 -
Bva10g00899 919 CDD B3_DNA 146 247 IPR003340 GO:0003677
Bva10g00899 919 SMART B3_2 147 249 IPR003340 GO:0003677
Bva10g00899 919 Gene3D - 145 248 IPR015300 -
Bva10g00899 919 Gene3D - 311 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00899 Bva-Chr10 6823509 6828905 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva10g00899 AUX_IAA 8.2e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00899 10 6823509 6828905 Bva10g00899 10 6823509 6828905 ECH