Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00897 ATGGCTGTGCTGGACGAGGGATTGAAGAAGTTGGAGTATTTGTCCCTTGTGTCGAAGGTGTGCACGGAGCTGGAGTCCCATACAGGAACCGGCGACAAGGTACTGGCTGAATTTATTACTGACTTGGGACATCATTCGGAAACTGTGGAGGAATTTGATgccaatttgaaagaaaacgGGGCGGAGTTTCCAGATTATTTCGTGAGGACACTACTCACTATCATCCATGCTATTCTTCCTCCAGAGTCCAAgtctgaaaaggaaaaggaattgaagaaagacaatGGCAACACAGATTCTAGCAATATTAAATTCAGGGCCTTGGGCATTGCAGATGACAAGGATCGAGTTAAGGAGCTTCAGAGAGAGATTGAAATGGAGGCTCGACGTGGGCAAAGAGAACATGATGAAGAGGATAGATATAGAGATAGAGACAGAGACagagatagagatagagacagagagaaaaatagagatagagagaggaGAGATAGTCGCAGGGATAGGTacgaaagagagagaggaagagattATGCAGATGAGGATGGAAGAAGGGATTACAGGAGTAAGGGAAGGCATAGAGATAGGCACGACAGGCGTAGGAGAGATGACTATGAATACGAAGAGGATAGAGATGGGAGGGACAAGAGTGACGAAGATGGAGATATAAGAGATCATAATACAAGGCGTGGCTCTAATGAACCTGAGTTGTATAGGGTTTATAAGGGCAGGGTGTCAAGAGTGATGGATTCAGGATGCTTTGTGCAATTAAGTGATTTTAGAGGGAAGGAGGGTTTGGTGCACGTTTCTCAGATTGCTACTCGAAGGATTGGGAATGCTAAGGACATTGTGAAGCGGGACCAGGAGGTTTATGTCAAGGTAATCTCAAATTCAGGTAATAAGTTGAGCCTTTCAATGAGGGATGTTGATCAGCATACTGGTAAGGATCTTCTTCCTCTAAAGAAAAGTTTGGAGGATGATGCTCTCCGAATGAATCCACAAGATTCAAAAGATGGCCCAGGAGCCAGGATAGGTCTTTCAGGGATCAGGATTGTGGAAGAGCATGATGTTGGTTCTTCACGTAGACCCCTAAAGAGGATGAGCTCTCCAGAGAGGTGGGAAGCAAAGCAGTTAATTGCTTCAGGTGTTTTAAGTGTTACAGAGTATCCTACATATGATGAGGAGGGAGATGGTGTGCTATACCAAGAGGAAGGTGCTGAAGAAGAGCTTGAGATTGAGCTGAATGAGGATGAACCCGCCTTTTTGCAAGGACAGAGTAGATATTCAATGGACATGTCACCCGTTAAGATTTTCAAGAATCCAGAAGGCTCTCTGAGTCGTGCTGCTGCTCTTCAGTCTGCTCTTATAAAGGAGCGTAGAGAAGTACGAGAACAACAACAACGCACGATGCTTGACTCAATTCCAAAGGATCTCAATCGCCCTTGGGAAGATCCTATGCCGGATACAGGTGAAAGGCATCTTGCACAAGAGCTTAGGGGTGTTGGCTTATCAGCCTATGATATGCCCGAGTGGAAAAAGGATGCTTATGGCAAAACCATCACTTTTGGACAAAGGTCGAAACTCTCCATTCAGGAACAAAGGCAGAGCTTACCTATctacaaattaaagaaagaattgatTCAGGCTGTCCATGATAATCAGGTGCTGGTGGTCATTGGTGAGACGGGTTCAGGTAAGACAACTCAGGTCACACAATATCTTGCCGAAGCTGGTTATACTACAAGGGGTAAAATTGGATGTACTCAGCCCCGTAGGGTGGCTGCCATGTCAGTCGCAAAGAGAGTGGCAGAAGAGTTTGGTTGCCGATTGGGGGAGGAAGTTGGTTATGCAATTAGGTTTGAGGATTGCACTGGACCAGATACTGTAATCAAGTACATGACAGATGGTATGCTTCTGAGGGAAATATTAGTAGATGAAAATTTGTCTCAGTATTCTGTTATAATGCTTGATGAAGCCCACGAAAGAACTATTCATACTGATGTTCTTTTTGGACTACTGAAACAGCTAGTGAAATGTCGACCTGATATGAGATTGATCGTTACATCTGCTACTCTAGATGCAGAGAAATTTtctgcatatttttttaattgtaacaTCTTTACAATTCCCGGGAGAACCTTTCCAGTAGAGATACTTTATACTAAGCAACCTGAAAGTGATTACTTAGATGCAGCTCTAATCACCGTTCTTCAGATACACTTGACAGAACCTGAAGGAGACGTCCTTCTCTTCTTGACTGGTCAAGAGGAGATTGATTTTGCTTGCCAGTCTCTCTATGAGAGGATGAAAGGTTTAGGTAAAAATGTTCCTGAACTGATCATTTTACCCGTATATAGTGCCCTTCCTAGTGAAATGCAATCTAGGATATTTGAACCTGCCCCTCCAGGGAAGAGGAAGGTGGTTGTGGCTACTAATATTGCTGAGGCTTCTTTAACAATTGATGggattttttatgttattgatCCTGGATTTGCGAAGCAAAACGTATATAACCCAAAGCAAGGTCTTGATTCTTTGGTGATAACTCCAATTTCGCAAGCATCGGCTAAACAAAGAGCTGGGCGAGCAGGGCGTACTGGACCTGGGAAGTGTTATCGCCTGTATACTGAGAGTGCATATAGAAATGAGATGTCTCCTACTTCAATTCCAGAAATTCAAAGGATAAATCTTGGATCGACTACCCTATCTATGAAAGCTATGGGGATAAATGATCTTCTTTCCTTTGATTTTATGGATCCACCTTCGCCCCAAGCTCTCATTTCTGCCATGGAACAGCTGTACAGCCTTGGAGCATTAGATGAAGAGGGCCTTCTAACCAAATTGGGTAGGAAGATGGCAGAATTTCCTTTGGATCCACCATTGTCCAAGATGCTTCTTGCGAGTGTAGACCTTGGGTGCAGTGATGAGATCTTGACCATAATTGCAATGATTACAACCGGAAATATCTTTTACAGGCCTAGAGAAAAGCAAGCCCAAGCAGATCAGAAAAGGGCTAAGTTTTTCCAGCCAGAGGGTGACCATCTTACTCTACTTGCTGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCTGGACCCTGGTGTTTTGAGAACTTTGTTCAATCTCGATCTTTGAGAAGGGCACAGGACGTCAGGAAACAGCTTCTCAGCGTCATGGATAAGTACAAATTGGATGTTGTAAGTGCTGGGAAGAACTTCACTAAGATCAGGAAGGCTATTACTGCGGGATTCTTTTTCCATGCTGCTAGAAAGGACCCCCAAGAGGGTTACAGAACCCTAGTTGAGAATCAGCCTGTATATATCCATCCCAGTTCGGCTTTGTTCCAGAGACAGCCAGATTGGGTCATCTACCATGAGCTAGTGATGACAACTAAGGAATATATGCGCGAGGTCACTGTCATTGACCCCAAATGGCTTGTCGAATCGGCTCCAAGGTTTTTCAAAGTGGCAGATCCGACAAAGATGAGTAAGCGGAAGCGTCAAGAGCGTATAGAACCACTTTATGATAGATACCATGAGCCAAATTCATGGCGATTGAGTAAACGCCGTGCATG 3572 0.4213 MAVLDEGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITDLGHHSETVEEFDANLKENGAEFPDYFVRTLLTIIHAILPPESKSEKEKELKKDNGNTDSSNIKFRALGIADDKDRVKELQREIEMEARRGQREHDEEDRYRDRDRDRDRDRDREKNRDRERRDSRRDRYERERGRDYADEDGRRDYRSKGRHRDRHDRRRRDDYEYEEDRDGRDKSDEDGDIRDHNTRRGSNEPELYRVYKGRVSRVMDSGCFVQLSDFRGKEGLVHVSQIATRRIGNAKDIVKRDQEVYVKVISNSGNKLSLSMRDVDQHTGKDLLPLKKSLEDDALRMNPQDSKDGPGARIGLSGIRIVEEHDVGSSRRPLKRMSSPERWEAKQLIASGVLSVTEYPTYDEEGDGVLYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPDTGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKCRPDMRLIVTSATLDAEKFSAYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDVLLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGSTTLSMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMITTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSVMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVESAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00897 1190 CDD SF2_C_RHA 714 875 - -
Bva10g00897 1190 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 652 661 IPR002464 -
Bva10g00897 1190 Gene3D - 713 887 IPR027417 -
Bva10g00897 1190 Pfam Helicase conserved C-terminal domain 735 867 IPR001650 -
Bva10g00897 1190 Pfam S1 RNA binding domain 239 296 IPR003029 GO:0003676
Bva10g00897 1190 SMART helicmild6 763 867 IPR001650 -
Bva10g00897 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 527 1060 IPR027417 -
Bva10g00897 1190 MobiDBLite consensus disorder prediction 125 189 - -
Bva10g00897 1190 Gene3D - 912 1011 - -
Bva10g00897 1190 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 547 710 IPR014001 -
Bva10g00897 1190 CDD S1_DHX8_helicase 238 314 - -
Bva10g00897 1190 SMART ultradead3 535 719 IPR014001 -
Bva10g00897 1190 SMART ha2_5 928 1018 IPR007502 GO:0004386
Bva10g00897 1190 MobiDBLite consensus disorder prediction 198 235 - -
Bva10g00897 1190 SUPERFAMILY Nucleic acid-binding proteins 238 314 IPR012340 -
Bva10g00897 1190 MobiDBLite consensus disorder prediction 125 235 - -
Bva10g00897 1190 CDD DEXHc_DHX8 532 710 IPR044762 GO:0000398|GO:0003724|GO:0005524
Bva10g00897 1190 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 728 908 IPR001650 -
Bva10g00897 1190 Pfam DEAD/DEAH box helicase 543 695 IPR011545 GO:0003676|GO:0005524
Bva10g00897 1190 Coils Coil 110 130 - -
Bva10g00897 1190 Gene3D - 232 318 IPR012340 -
Bva10g00897 1190 PANTHER ATP-DEPENDENT RNA HELICASE 87 1190 - -
Bva10g00897 1190 Gene3D - 509 712 IPR027417 -
Bva10g00897 1190 ProSiteProfiles S1 domain profile. 238 307 IPR003029 GO:0003676
Bva10g00897 1190 SMART S1_6 236 307 IPR022967 -
Bva10g00897 1190 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1075 1150 IPR011709 -
Bva10g00897 1190 Pfam Helicase associated domain (HA2) 929 1017 IPR007502 GO:0004386
Bva10g00897 1190 Coils Coil 448 468 - -
Bva10g00897 1190 PANTHER - 87 1190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00897 Bva-Chr10 6814095 6819935 Dispersed/Wgd