Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00876 ATGAAGATCCAGTGCGACGTGTGTAATAAAGACGAGGCTTCGGTGTTCTGCACCGCCGATGAGGCAGCCCTCTGTGACGGCTGCGACCGTCGTGTGCACCATGCTAACAAACTCGCCTCCAAACACCAACGCTTTTCTCTTGAACGCCCTTGTGCTAAGAAATACCCTCTCTGCGATGTCTGCCTGGAGAGGAGGGCTTTCGTGTTCTGTAAGCAGGATAGAGCGGTCCTGTGCAAAGACTGTGACTTGCCGATCCATTCGGCCAACGAGAATACCCAGAAGCATGATAGATTTCTTCTTACTGGGATTAAGCTCTCTGCTGCAGCCGCGCTTTATTCACCATCAGCCTCCAATTCTGTTATCACCAACACCCCTGACTCTATTTCTAATCCCAAGTCTCAGTCTTCGGTGAAGAACTCTGCTTTTCCTTCTACTTCCATTTCAAATCCTCCAATTTTGGTGACCAAAAATTCACCTTCAACAACGGCAACAGCGTCTGCAATCGCATCCCCGACCGTTAACATAGCTGGAGGAAACTTGTTAACTACTGAAGGGGTGGGTTCCACAAGCAGCATATCGGAGTATTTGATGGAGACTATTCCGGGATGGCAGGTCGAAGACCTTCTTGATTCATCTTCTGTTCCGTTAGGTTTAAGCAAGAATGATGATATGTTGCCGTTTTTCGATGCCGATGTCGAGGGTAATCTGGATTCTTTCTCTCCCTGGAGTATGGGGATCTGGGTTCCTCAAGCACCCTCGCCTCTGTATTCTGCCCAAATGGATAGGCAGACTGGATTCAAAGAGACAAAGGATACTACCACAAACATCAAAGCCAATAGATCAAGGTTGAGGGATGATAATTTCATAGTTCCCCAGATTAGCCTTCCCTCCATTAGATCCAAAAGATCCAGGCTTCTAAGGGGACAGGAGAATACATTTTTGGATGTAAGACAACTAGAAACGAAGGAGTTGAAGGAGAAGATTGCACTGGAAAATGTGATGATGGCAGTCAGATTAAGAGAAAGAGACAGGCGTGGGGGCGGAGGAGGCAAAAAGGGTCAGAATAGATA 1070 0.4738 MKIQCDVCNKDEASVFCTADEAALCDGCDRRVHHANKLASKHQRFSLERPCAKKYPLCDVCLERRAFVFCKQDRAVLCKDCDLPIHSANENTQKHDRFLLTGIKLSAAAALYSPSASNSVITNTPDSISNPKSQSSVKNSAFPSTSISNPPILVTKNSPSTTATASAIASPTVNIAGGNLLTTEGVGSTSSISEYLMETIPGWQVEDLLDSSSVPLGLSKNDDMLPFFDADVEGNLDSFSPWSMGIWVPQAPSPLYSAQMDRQTGFKETKDTTTNIKANRSRLRDDNFIVPQISLPSIRSKRSRLLR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00876 307 Gene3D Classic Zinc Finger 1 98 - -
Bva10g00876 307 MobiDBLite consensus disorder prediction 123 143 - -
Bva10g00876 307 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Bva10g00876 307 CDD Bbox1_BBX-like 57 100 - -
Bva10g00876 307 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 305 - -
Bva10g00876 307 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 305 - -
Bva10g00876 307 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bva10g00876 307 SMART bboxneu5 53 100 IPR000315 GO:0008270
Bva10g00876 307 CDD Bbox1_BBX-like 5 47 - -
Bva10g00876 307 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Bva10g00876 307 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Bva10g00876 307 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00876 Bva-Chr10 6701985 6703454 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Bva10g00876 zf-B_box 1.3e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00876 10 6701985 6703454 Bva06g01945 06 13161996 13163103 BWGD
Bva10g00876 10 6701985 6703454 Bva13g01771 13 14314598 14317677 ECH
Bva10g00876 10 6701985 6703454 Bva10g00876 10 6701985 6703454 ECH