Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00873 ATGGCTGGATTCTTCTCTCTAGGCCCACAAAGCAAACgagaagatcaagaaaaggaagaaaacggTAATAGCTTATTCTTGTTCAGGAACGAAGAGATCTACAACAACAGCAACAAGGGATTTGAGATATGGCCACAGTCTTATCAGCAGCACCAAAACTTGAGCAACTACTACTCATTTGGAGTGGGTCCTAGTCGAAGAAACTCCTCCAACGAAGACGTTTCTGATGATCAGTCTACGAGATTTGGACTCACGGTGATGAGGTCTGGAGGTCTAGTAGGAGGAGGAGGCATGAACTGTCAGGATTGTGGGAACCAAGCTAAGAAAGACTGTGCACATCTTAGATGCAGGACTTGTTGCAGGAGCCGAGGGTTTCAGTGCCAAACACACCTCAGGAGTACTTGGGTTCCAGCAGCTAAACGCCGTGAACGACAACAACAACTCTCCTTGTTGCatcaacagcagcagcaacaacaacaacagttACAGAAGCACCAAGAGCACCTTCGTGGTGAGAATCCAAAACGGCACAGAGAAAACCAAGCTTCAGGCTCCTTAGCCTGCGTTCCATTACCCATCACCACCACAGGGTTGGAACTGGGACATTTCCCACCCGAACTGAACTCTCCAGCTGTATTTCGTTGTGTGAGAGTAAGCCCACTGGACAGTGCTCCCGATGAGCAATACGCGTATCAAACAGCTGTCAACATTGGAGGGCATGTTTTCAAGGGAATTCTTTATGATCAAGGCCCTGAAGGTCCTTACACCACAGGTGGCCATGGCGAGAGCCCTTCCGGCGGAGGTGAAGCTCAACAACTTAACCTGATAACAGCCGCAGcaaccaccaccaccaccacaacCACCGGCAACCCATTTGATCCTTCACTCTACCCGGCTCCACTCAACGCATTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTA 950 0.4568 MAGFFSLGPQSKREDQEKEENGNSLFLFRNEEIYNNSNKGFEIWPQSYQQHQNLSNYYSFGVGPSRRNSSNEDVSDDQSTRFGLTVMRSGGLVGGGGMNCQDCGNQAKKDCAHLRCRTCCRSRGFQCQTHLRSTWVPAAKRRERQQQLSLLHQQQQQQQQQLQKHQEHLRGENPKRHRENQASGSLACVPLPITTTGLELGHFPPELNSPAVFRCVRVSPLDSAPDEQYAYQTAVNIGGHVFKGILYDQGPEGPYTTGGHGESPSGGGEAQQLNLITAAATTTTTTTTGNPFDPSLYPAPLNAFMAGTQFFPPPRS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00873 316 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 314 IPR007818 GO:0003700|GO:0006355
Bva10g00873 316 MobiDBLite consensus disorder prediction 165 179 - -
Bva10g00873 316 Coils Coil 148 168 - -
Bva10g00873 316 MobiDBLite consensus disorder prediction 1 22 - -
Bva10g00873 316 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 99 141 IPR006510 -
Bva10g00873 316 Pfam Domain of unknown function (DUF702) 97 252 - -
Bva10g00873 316 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 202 251 IPR006511 -
Bva10g00873 316 MobiDBLite consensus disorder prediction 152 186 - -
Bva10g00873 316 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00873 Bva-Chr10 6680667 6682373 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Bva10g00873 DUF702 1.7e-65 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00873 10 6680667 6682373 Bva06g01949 06 13186024 13188637 BWGD
Bva10g00873 10 6680667 6682373 Bva13g01757 13 14188445 14189621 ECH
Bva10g00873 10 6680667 6682373 Bva10g00873 10 6680667 6682373 ECH