Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00870 ATGGGCCGCCATATCCTCTcggctttctttctcttgtctcTCTTGTCCGCTGCGGTAGCTACTGCCGATCGAATCGATGACGAAGATGATCTTCTGATCCGTCAGGTGACGGACGACGATGATCACCTCCTCAACGCCGAACACCATTTCTCTATCTTCAAGTCAAACTTCGGCAAGATCTACGCTACAAAGGAAGAGCACGACTATCGCTTCGGTGTCTTCAAGGCTAACCTGCGTCGAGCCAAGTTACACCAGAAGCTCGACCCCTCCGCCGTCCACGGTGTCACAAAATTCTCCGATCTTACTCCGTCGGAGTTCCGCCAAAAGTACCTCGGCCTTAAGCCTCTTCGTCTTCCGGCAGATGCTAACAAGGCTCCGATCCTCCCTACTAGCGATCTCCCTAAAGACTTCGATTGGCGTGACCATGGCGCCGTCACTGGTGTCAAGGATCAGGGTTCTTGTGGATCATGCTGGTCGTTTAGCACTACAGGAGCGTTAGAAGGAGCTCATTTTCTTTCGACTGGTGAGCTAGTGAGCCTTAGTGAGCAGCAGCTCGTGGATTGCGATCATGAgTGTGATCCGGAAGAATATGGATCATGTGACTCAGGTTGTAACGGTGGGTTGATGAACAATGCCTTTGAGTACACACTCAAGGCTGGTGGACTAATGCGAGAAGAAGACTATGCTTACACTGGAACAGATCGTGGCCCCTGCAAGTTTGACAAAAGCAAAATTGCTGCGTCCGTTGCTAACTTCAGCGTAATATCCATTGACGAAGATCAAATTGCTGCAAATCTAGTGAAGCATGGTCCTCTTGCAGTTGGTATCAACGCAGTTTTTATGCAGACATACATGCATGGCGTTTCATGCCCATATATCTGTGGAAAGCATTTGGATCATGGGGTTCTTATAGTGGGTTATGGCGCCGCTGGTTATGCTCCGATTCGGTTCAAGGAAAAACCATATTGGATTATTAAGAACTCGTGGGGAGAGAGCTGGGGTGAGAACGGATATTACAAGATCTGCAAGGGCCGAAATATATGCGGGGTGGATTCCATGGTCTCTAGCGTAGCTGCTCCGCATAttactaaacaata 1097 0.4795 MGRHILSAFFLLSLLSAAVATADRIDDEDDLLIRQVTDDDDHLLNAEHHFSIFKSNFGKIYATKEEHDYRFGVFKANLRRAKLHQKLDPSAVHGVTKFSDLTPSEFRQKYLGLKPLRLPADANKAPILPTSDLPKDFDWRDHGAVTGVKDQGSCGSCWSFSTTGALEGAHFLSTGELVSLSEQQLVDCDHECDPEEYGSCDSGCNGGLMNNAFEYTLKAGGLMREEDYAYTGTDRGPCKFDKSKIAASVANFSVISIDEDQIAANLVKHGPLAVGINAVFMQTYMHGVSCPYICGKHLDHGVLIVGYGAAGYAPIRFKEKPYWIIKNSWGESWGENGYYKICKGRNICGVDSMVSSVAAPHITKQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00870 365 SMART pept_c1 133 358 IPR000668 GO:0006508|GO:0008234
Bva10g00870 365 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 359 - -
Bva10g00870 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 322 341 IPR025661 -
Bva10g00870 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 151 162 IPR000169 -
Bva10g00870 365 SMART Inhibitor_I29_2 50 106 IPR013201 -
Bva10g00870 365 Gene3D Cysteine proteinases 23 358 - -
Bva10g00870 365 Pfam Papain family cysteine protease 133 356 IPR000668 GO:0006508|GO:0008234
Bva10g00870 365 CDD Peptidase_C1A 134 357 IPR039417 -
Bva10g00870 365 Pfam Cathepsin propeptide inhibitor domain (I29) 50 106 IPR013201 -
Bva10g00870 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 298 308 IPR025660 -
Bva10g00870 365 PANTHER CYSTEINE PROTEASE RD19C-RELATED 24 359 - -
Bva10g00870 365 PRINTS Papain cysteine protease (C1) family signature 151 166 IPR000668 GO:0006508|GO:0008234
Bva10g00870 365 PRINTS Papain cysteine protease (C1) family signature 300 310 IPR000668 GO:0006508|GO:0008234
Bva10g00870 365 PRINTS Papain cysteine protease (C1) family signature 322 328 IPR000668 GO:0006508|GO:0008234
Bva10g00870 365 SUPERFAMILY Cysteine proteinases 47 357 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00870 Bva-Chr10 6664777 6667225 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00870 10 6664777 6667225 Bva10g00870 10 6664777 6667225 ECH