Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00867 ATGCTGAAATCAGGCATAAGAGGAGTGGATCAAGAGAGGAAGCAGGCGAAGAAGCCAGCACAGTCTAGCTCCAGAAAGGGGTGTATGAGAGGGAAAGGAGGCCCTGAAAACGCCAGTTGCACCTACAAAGGTGTACGACAGAGAACTTGGGGGAAATGGGTCGCCGAGATCCGTGAACCCAATCGCGGTGCTCGCCTCTGGCTCGGCACATTTGAGACTTCCCATGAAGCTGCTTTGGCTTATGATGCTGCTGCACGTAAGCTTTATGGCTCTGAAGCCAAGCTCAATCTCCCCGAACTCTCTGTCTCTCACTGTCCGTCACCCATTGCTGCCCCTTGCACCCTGATTCCACAAATGCCAAACCAGCAGCATCAGACTCTGTCTCATCAGCTTCAGTTTCAGCTTCAACAAAACATGTCACAAATTCCAAATTGTTCTGATCTGGATACCTCTCCAATCCCCATGGCCACCCACCAAGTTGGACCAATATATACCAGTGACTGTATCGTTTCTCTTCCCTTTGAGACTGACACCACTAAGCCAGCTGCAATGGAAAGCAGCCAGAAAGAGGACATTGATCAGTTTCATCCACTTTGGGGGACAACGAATGAGAGCCTCCCTCCATTGGATGACGACTCTATCTGGGCAGAAGCTGCCATGTCTGTAGATTTACCTCTAATGGCCGAAGCTGGAATTTTCGCCGCTGGGACTGGGAATTGCTTAGCAGATGCCACTGGCCTGGACGCTCTTCATTCTCCTTGGTGCGTGTG 770 0.5104 MLKSGIRGVDQERKQAKKPAQSSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSEAKLNLPELSVSHCPSPIAAPCTLIPQMPNQQHQTLSHQLQFQLQQNMSQIPNCSDLDTSPIPMATHQVGPIYTSDCIVSLPFETDTTKPAAMESSQKEDIDQFHPLWGTTNESLPPLDDDSIWAEAAMSVDLPLMAEAGIFAAGTGNCLADATGLDALHSPWCV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00867 256 MobiDBLite consensus disorder prediction 1 40 - -
Bva10g00867 256 MobiDBLite consensus disorder prediction 1 19 - -
Bva10g00867 256 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Bva10g00867 256 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Bva10g00867 256 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Bva10g00867 256 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Bva10g00867 256 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Bva10g00867 256 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 253 - -
Bva10g00867 256 CDD AP2 40 100 IPR001471 GO:0003700|GO:0006355
Bva10g00867 256 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Bva10g00867 256 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D-LIKE 7 253 - -
Bva10g00867 256 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00867 Bva-Chr10 6642450 6643220 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva10g00867 AP2 8.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00867 10 6642450 6643220 Bva06g01958 06 13228348 13229148 BWGD
Bva10g00867 10 6642450 6643220 Bva10g00867 10 6642450 6643220 ECH