Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00860 ATGTACCCGAACCAGGCTTTTTCTTCTGGGTCCTATGCAGAAATGTTGTCTGGGAGTTCTCTATTTCCTCATAACTACAGTGAATCTGTTGGAGGCCAAAATGAGATGAAGTTTATGACAGCCATAGGTGACACAGTCACTATGCATTCTATTGATGGGCATTCCAATGGCAATGACCCTTCAACAGGTGACCCATCTCGCAACTCATTTACTGGAGACTCCCATGTCATTCCTAGGACACAACTGGGACTCGTAGATAATGATCAAAACATACAGTGCCAGGGTTTATCTCTTAGCCTAGGAACCCTTATGCCTTCCAATGCATCCGCCCATCCGTTTCAGTACCAGTACTCCACTGCAGGTCTCTCATCGCTCATGACCAATTGTCTTCCAAACTTCAAGGGGACTACATCGCTTAAAGACGATGGTGACGTGGCATCTGGGTCTTGTGGAGGCTTTCACAACTCTATAAAAAAGGAGGCTTTGTACAATCCCCAAGTGCTCTCTGTCTCTGATCCAAGTCTGCATGGGTCACCGCGTTTAATAAACACTGTTCTAAACTCTCAATACCTTAGGGCAGCACAGGAGTTGCTTAATGAAATAGTTAATGTACGAAAGGCTTTGAAGCAGCCTGGAttggaaaaacataaaagctTCCGCGATATTGGATCAGATGGCTCCAAAGATGCTGATGGAAGATCTATCGGCCAATCCATGCAGGACCCTAATGCTTCAGCTAACAACTCCTTATGTGAATTCTCACCTGCAGAGAGACAGAACTTGTTGGACAAGAAGACAAAACTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACCGGCAGTATTGCCATGAAATGCAAATTGTGGTGTCGTCTTTCGACATGGTTGCTGGGTGTGGTGCAGCTGAGCCATATACTGCAGTTGCTTTGCGGACAATTTCTCGCCACTTCCGGTGTTTGCGTGATGCTATCAGTGGGCAAATCCAAGTGACTCAAAGAAAGCTTGGGGAGCAAGAGGGAATACCACGCCTCCGCTACGTTGACCAGCAGCTCAGACAACAAAAGGCCATTCAGCAGCTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAAGCTCTGTCTCAATACTACGTGCTTGGCTCTTTGAGCATTTCCTCAACCCTTACCCAAAGGATTCAGAGAAAATTATGCTGGCAAGGCAAACAGGCTTGACCAGAAACCAGGTAGCAAACTGGTTCATTAATGCACGGGTGCGCCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAGTTTGGTAATTCTGAGATAAGCTGCAATCTTTCATCTGAAAATACACCTAGAGCACCAAAAGACGATGCGCAAGTTTCTGATAACAAAGGGGAAGAGTCAGGGGACAACTTGATAACTGTTGATAGCATCCAAGGAGGGCAACTTCAAGGGTCAAAACTGGGCAATACTAACACAAGAGAAGTGGATGGCAGGGCTATGAAGATGGGGATTCAAACTAGTGGCCATGGTGAAAATGTCATAGAATCTGGAATTATGAAATTGCAGGGTGGACAAAGGTCTAACATGAACAATGGCTTTTATTCAAGCGGCCCCATTCCAACCAACGAGAATGGCGATGGCTGCGTTATGGCTTCAACTCCTGCCACATATGATTTATCAGAGTTAGGTAGTTTTTCTGTGGGTGGCCATGTCTCCCTTGCATTGGAATTGCGGAACTGTGAAAACGATGGATTTGCCATGTCCGATGATGGCATCCATAAAAGACGTAATCAGACATTGGCTTCTTCTCCTGATAATGATTTGCTGGATTATCATTTTTCAGAACCAGGAAAGCAACAACACAGGTTTGGCAATCCTCACCTGTTACACGAGTTTGTCGTCTG 1910 0.4513 MYPNQAFSSGSYAEMLSGSSLFPHNYSESVGGQNEMKFMTAIGDTVTMHSIDGHSNGNDPSTGDPSRNSFTGDSHVIPRTQLGLVDNDQNIQCQGLSLSLGTLMPSNASAHPFQYQYSTAGLSSLMTNCLPNFKGTTSLKDDGDVASGSCGGFHNSIKKEALYNPQVLSVSDPSLHGSPRLINTVLNSQYLRAAQELLNEIVNVRKALKQPGLEKHKSFRDIGSDGSKDADGRSIGQSMQDPNASANNSLCEFSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHEMQIVVSSFDMVAGCGAAEPYTAVALRTISRHFRCLRDAISGQIQVTQRKLGEQEGIPRLRYVDQQLRQQKAIQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGNSEISCNLSSENTPRAPKDDAQVSDNKGEESGDNLITVDSIQGGQLQGSKLGNTNTREVDGRAMKMGIQTSGHGENVIESGIMKLQGGQRSNMNNGFYSSGPIPTNENGDGCVMASTPATYDLSELGSFSVGGHVSLALELRNCENDGFAMSDDGIHKRRNQTLASSPDNDLLDYHFSEPGKQQHRFGNPHLLHEFVV 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00860 636 SUPERFAMILY Homeodomain-like 368 434 IPR009057 -
Bva10g00860 636 SMART HOX_1 367 431 IPR001356 GO:0003677
Bva10g00860 636 Gene3D - 364 441 - -
Bva10g00860 636 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 601 - -
Bva10g00860 636 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Bva10g00860 636 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 28 601 - -
Bva10g00860 636 MobiDBLite consensus disorder prediction 231 250 - -
Bva10g00860 636 MobiDBLite consensus disorder prediction 444 472 - -
Bva10g00860 636 CDD homeodomain 367 428 IPR001356 GO:0003677
Bva10g00860 636 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Bva10g00860 636 Pfam Associated with HOX 185 325 IPR006563 -
Bva10g00860 636 SMART prehox3 179 326 IPR006563 -
Bva10g00860 636 MobiDBLite consensus disorder prediction 49 75 - -
Bva10g00860 636 MobiDBLite consensus disorder prediction 215 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00860 Bva-Chr10 6599137 6603614 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva10g00860 POX 8.5e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00860 10 6599137 6603614 Bva10g00860 10 6599137 6603614 ECH