LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva10g00852	atggcCTCGTCCAGTGGAGCTTCTTCCTCCATAAGCACCAAGTTTCAGAGCTCTGGTTCGGAGGAGGATTTGCAGCTTGTGATGgagcaaagaaaaaggaagagaatgcAGAAGAATCGAGAATCTGCGAAGCGATCGCGGATGCGGAAACAGAAGCAACTGGATGATCTGATGGCCCAAGTGGCTGAGCTGAGAAAGGAAAACAGCGACATCGTCAGCGACATAAACGTCATCACGCAGCTGTATGTGAATGTTGAGGGAGAGAACAACATTTTGAGGGCTCAGATGGTGGAACTTAGCCAAAGGCTCCAATCACTCAATTACATCCTCAACTACATCAACAAAAGCACCGGTATCTATGAGACCGACAGTTTCTTGAATCCCATGAACATGCTCTGTCTTAACCAGCCCATTATGGCTTCTCCAGACATTTTTCAGTGGTG	443	0.4447	MASSSGASSSISTKFQSSGSEEDLQLVMEQRKRKRMQKNRESAKRSRMRKQKQLDDLMAQVAELRKENSDIVSDINVITQLYVNVEGENNILRAQMVELSQRLQSLNYILNYINKSTGIYETDSFLNPMNMLCLNQPIMASPDIFQW	147

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva10g00852	147	MobiDBLite	consensus disorder prediction	1	52	-	-
	Bva10g00852	147	CDD	bZIP_plant_GBF1	32	82	IPR045314	GO:0003700\|GO:0006355
	Bva10g00852	147	Coils	Coil	26	74	-	-
	Bva10g00852	147	SUPERFAMILY	Leucine zipper domain	31	83	IPR046347	GO:0003700\|GO:0006355
	Bva10g00852	147	Pfam	bZIP transcription factor	30	84	IPR004827	GO:0003700\|GO:0006355
	Bva10g00852	147	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	34	49	IPR004827	GO:0003700\|GO:0006355
	Bva10g00852	147	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	29	80	IPR004827	GO:0003700\|GO:0006355
	Bva10g00852	147	MobiDBLite	consensus disorder prediction	1	24	-	-
	Bva10g00852	147	Coils	Coil	82	102	-	-
	Bva10g00852	147	PANTHER	BZIP TRANSCRIPTION FACTOR	1	145	-	-
	Bva10g00852	147	SMART	brlzneu	27	91	IPR004827	GO:0003700\|GO:0006355
	Bva10g00852	147	Gene3D	-	29	86	-	-
	Bva10g00852	147	PANTHER	BZIP TRANSCRIPTION FACTOR 44	1	145	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva10g00852	Bva-Chr10	6563575	6564834	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Bva10g00852		bZIP_1	2.4e-11	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva10g00852	10	6563575	6564834	Bva10g00852	10	6563575	6564834	ECH