Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00826 ATGCCATTGAGAGATTTTTTTCACGAGCTCAGAGAGATGAGAGATGGCATGGGAAATATATCTGGAAGAGGGCCACAGGCAAGGCATACGCATCGCCGAGGAAAATCACATATTGCACCTTCACCACCACcatcatcattatcattatcattatcatcatcatcatcatcatcgaTGATGACTGAGGAGAGCCATTGGGCGAACTTACCTCCGGAGTTGTTATTAGACATTATACAAAGAGTAGAAGCGATTGAAACTTCCTGGCCAGCCAGGAGAGCGGTTGTAGCTTGTGCCTCCGTCTGTAGAACCTGGAGGGAGATAACCAAGGAAGTGGTCAAGACATTGGAACAGTGTGGGTGCATTAGCTTCCCTATATCACTGAAGCAGCCCGGGCCAAGAGAGACTCCAATACAGTGTTTTATTAAGAGAGAAAGGATGACCTCAACATATTATCTATATCTTGGTCTAAGCCCTGCTCTTTCTGGGGACGTGAGCAAACTGCTATTGGCCGCAAAGAAGATTAGAAAAGCAACATGTACAGAATTTTCAATATCCTTGGTTGCGGATGATTTCTCTCGAGCTGCCAATACTTACGTTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTTATGGTCTTGGATAGTCAGCCACCGCATGATTCTGCCCTTCACTCAAATTGCAAATTGCAGCGAAGAGTCCATTTGAAGCAGGTACTTCCGAGGGTTTCTGCTGTTAATTATCATGTGGCTACCATATGTTATGAGCTCAATGTTCTCCGCACGAGAGGTCCAAGGAGAATGAGATGTACCATCAACTCAATCCCCATATCTGCAATCCAGGAAGGGGGCACTGCCCCTACTCCTTTGAATTTTACTAATTGTCTTGATGAAAATTTGTCTACTTCGCCCatttcaaaaggaaagaagccAGGAGTTGAGTTTAGCTCCAGTAGCGTTGAGAAGCCTCCAGAATCAACAACCCACCATGCAAGTGAACCActgattttgaaaaataaatctcctAGATGGCATGAGCAACTGCAATGTTGGTGCCTGAATTTCAAAGGGCGAGTGACGGTGGCCTCTGTCAAGAACTTCCAGCTCGTAGCAGCAGCAGAACCTCACCACAATGTTCCAGTTGCTGAACAAGATAAAGTAATACTGCAATTCGGAAAAATTGGGAAGGATATATTCACTATGGATTACCGTTACCCTCTCTCTGCCTTTCAAGCATTTGCAATTTGCTTGAGCAGCTTTGACACTAAACCAGCTTGTGAATG 1283 0.4248 MPLRDFFHELREMRDGMGNISGRGPQARHTHRRGKSHIAPSPPPSSLSLSLSSSSSSSMMTEESHWANLPPELLLDIIQRVEAIETSWPARRAVVACASVCRTWREITKEVVKTLEQCGCISFPISLKQPGPRETPIQCFIKRERMTSTYYLYLGLSPALSGDVSKLLLAAKKIRKATCTEFSISLVADDFSRAANTYVGKLRSNFLGTKFMVLDSQPPHDSALHSNCKLQRRVHLKQVLPRVSAVNYHVATICYELNVLRTRGPRRMRCTINSIPISAIQEGGTAPTPLNFTNCLDENLSTSPISKGKKPGVEFSSSSVEKPPESTTHHASEPLILKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPHHNVPVAEQDKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00826 427 Gene3D Tubby Protein; Chain A 125 427 IPR025659 -
Bva10g00826 427 MobiDBLite consensus disorder prediction 15 55 - -
Bva10g00826 427 MobiDBLite consensus disorder prediction 41 55 - -
Bva10g00826 427 Pfam F-box domain 66 112 IPR001810 GO:0005515
Bva10g00826 427 Gene3D - 60 114 - -
Bva10g00826 427 PANTHER TUBBY-RELATED 1 427 - -
Bva10g00826 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 427 - -
Bva10g00826 427 SUPERFAMILY Tubby C-terminal domain-like 116 427 IPR025659 -
Bva10g00826 427 SUPERFAMILY F-box domain 63 110 IPR036047 GO:0005515
Bva10g00826 427 Pfam Tub family 127 422 IPR000007 -
Bva10g00826 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Bva10g00826 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Bva10g00826 427 PRINTS Tubby superfamily signature 355 371 IPR000007 -
Bva10g00826 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Bva10g00826 427 PRINTS Tubby superfamily signature 198 222 IPR000007 -
Bva10g00826 427 PRINTS Tubby superfamily signature 182 198 IPR000007 -
Bva10g00826 427 PRINTS Tubby superfamily signature 247 274 IPR000007 -
Bva10g00826 427 PRINTS Tubby superfamily signature 337 354 IPR000007 -
Bva10g00826 427 ProSitePatterns Tub family signature 1. 355 368 IPR018066 -
Bva10g00826 427 MobiDBLite consensus disorder prediction 303 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00826 Bva-Chr10 6446116 6450039 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva10g00826 Tub 6.4e-105 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00826 10 6446116 6450039 Bva10g00826 10 6446116 6450039 ECH