Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00782 ATGGGTTGGCTtagcaaaatttttaaaggcTCCGACCACAAAATTTCGGAAGGGCATTATCACACGAACTATAGAGACGATACAGATTATTACGCACCATCAACTTCTAGGGATGTTTGGCCAGAGAACGACCATGAAGATCTAGATCGTGCTATAGCATTATCTCTTATAGAAGAAAATCAGAAAGGGAAGAAAGTGAATGACTACAAGTTACAACTAGAAGAAGACGAACAACTCGCTAGAGCTCTACAAGAAAGCCTAAATGTTGAGTCTCCTCCCAGATACGGGAATGGAAATATGTACCAACCAGTTCCGGTGTATTTCCCAATGGGATCCAGAATTTGTGCTGGTTGCAATACTGAGATTGGTCATGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGTAATATACCGATCTCCGATTATGAGTTCTCCACCTATGGGAATTACCCTTACCATAGATCTTGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCTACAAACCCCGCTGGTCTTATTGAATATAGGGCGCATCCTTTCTGGATCCAGAAATATTGCCCTTCTCATGAACATGACGGTACTCCACGGTGTTGTAGCTGTGAGCGAATGGAGCCACGAGAGACGAGATATTATGCTCTAAATGATGGTCGGAAGCTTTGCTTAGAGTGTCTGGATTCTGCTATCATGGAAACAAACGAATGCCAACCCCTTTATAAtgatatactaaaattttatgaaggtCTAAATATGAAATTGGAACAGAAAATTCCATTGCTCCTGGTTGAAAGACAAGCACTGAACGAAGCAAGAGAAGGGGAGAAAAATGGCCACTATCACATGCCTGAGACCAGGGGACTCTGCCTTTCTGAGGAACAGACTATCAGCACTATTGTAAGGCGACCTAGGTTTGGAACAGGAAATCGGGCAGTAGACATGAGAACAGGACCCTACAAACTCACTCGACGTTGTGATGTGACAGCAATTCTCGTTTTGTATGGTCTCCCGAGATTGCTTACTGGATCTATCCTGGCTCATGAGATGATGCATGCATGGCTGCGACTTAAAGGTTACCGAACTCTTAGTCTAGAAGTTGAAGAAGGTATCTGTCAGGTTGTGGCTCATATGTGGTTGGAGGCTGAGCTTTCATCTGCATCAGGCAGCAACTTTGTATCGGCCCCATCCTCATCTGCATCGTATGCATCTAAACGAGGTAAAAGACCGCCATTTGAGAGGAAACTTGGGGAATTCTTCCAGCACCAGATTGAATCAGACATTTCCCCCATTTATGGGGATGGATATAGAGCAGGTCAACAAGCAGTACGTAAGTATGGTCTAGAAAGCACCCTTAACCATATCTGGTTGACAGGGAGCTTTCCTTATTG 1433 0.4299 MGWLSKIFKGSDHKISEGHYHTNYRDDTDYYAPSTSRDVWPENDHEDLDRAIALSLIEENQKGKKVNDYKLQLEEDEQLARALQESLNVESPPRYGNGNMYQPVPVYFPMGSRICAGCNTEIGHGRYLNCLNAFWHPECFRCRACNIPISDYEFSTYGNYPYHRSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMEPRETRYYALNDGRKLCLECLDSAIMETNECQPLYNDILKFYEGLNMKLEQKIPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQTISTIVRRPRFGTGNRAVDMRTGPYKLTRRCDVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYRTLSLEVEEGICQVVAHMWLEAELSSASGSNFVSAPSSSASYASKRGKRPPFERKLGEFFQHQIESDISPIYGDGYRAGQQAVRKYGLESTLNHIWLTGSFPY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00782 477 Pfam Protein DA1 264 471 IPR022087 -
Bva10g00782 477 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Bva10g00782 477 SMART uim 74 93 IPR003903 -
Bva10g00782 477 SMART uim 43 62 IPR003903 -
Bva10g00782 477 CDD LIM_DA1 115 167 - -
Bva10g00782 477 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Bva10g00782 477 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 107 140 - -
Bva10g00782 477 Coils Coil 66 86 - -
Bva10g00782 477 SMART lim_4 114 166 IPR001781 -
Bva10g00782 477 Pfam LIM domain 115 169 IPR001781 -
Bva10g00782 477 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 74 93 IPR003903 -
Bva10g00782 477 PANTHER PROTEIN DA1-LIKE 1 477 - -
Bva10g00782 477 Gene3D Cysteine Rich Protein 108 173 - -
Bva10g00782 477 PANTHER PROTEIN DA1-RELATED 2 1 477 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00782 Bva-Chr10 6252399 6257551 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva10g00782 DA1-like 4.2e-97 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00782 10 6252399 6257551 Bva10g00782 10 6252399 6257551 ECH