Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00767 ATGGCCAGCGAGAGTCGTCAAGAAAAGTTAGACGCGAGGAGGCCTCAGTTTTATGAGTTTTATTCATCTACTTCCAACTCAGAGAGACTGAAAATTCCAGCTGGATTTATGAGTCACATGGAAGGCAAGACATCTGGTTTAGTTTCAATAATGGGTCCCAGCGGAAACACTTGGCACGTCCAATTGATTCAGGAGGGCGATGATCTTTTCTTCCATCACGGATGGCCAGCATTTGTGGGAGATCATCTTATCGAATGTGGTGACCTTTTGGTTTTCAGATACGAGGGTCACTTGCATTTCACTGTGCAAGTATTTGATCAAAGTGCTTGCCAAAAAGAAGTTGCATTTTATTCTGAATGTAGTCAAAATTCCGgtgattttaatattaatggaCAGAAAAGAGATAGGGAGGATAATTCTTCTTTGGATGTAGTTGCTGAAGTTTTgctaaagaaaatgagaggaagCACCTGCCAGAACTGGAAACTTAACATGGatgtaattgataaaaaacTATCCCAGTATGAGGCAGTAAAACCGATTAATATGttcagagagaaagaagaatccTCCAAAGAAACTGAGCAAAGTGCAGGTCCAGCTAGTGACGTTGCAGTGTCTTCTCGAAAGGAATATGTCAGTGAAAATGAAGAGGGTGCCATCCGAAATAGAAGCGGGAAGAAAGATGATCAGTATATGTGTCATGGGGTTTGTCTGTCAAACTTATCAGCACATGATGAGAAAAAAGTAGCTCAATCATTTACTTCCTCTTTCCCGTATTTTGTGAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAACATCCCATATCAATTCTCAATGGCACATCTTCCAAACTACAAGACAAGGATTATCCTTCATAATTTGAAAGGAGAACATTGGGCTGTTAATTCTGTGCCAACAACAAGAGTACATACAAGTCACACCCTCTGTGGAGGATGGATGGCATTTGTCCGTGGAAATAACATCAAGATCGGAGATATCTGCATTTTTGAACTTGTGCAAGAATGTGAATTGCGTGTTCGCATTGTTGGGGCAGGAAAAGATGGTCTGGACTGCCAGTGTGGAAAACTAGCTATCACTGGGCCTAGTGTTGGACATGCCTTCGCTTCCCATAAAACTTCTAAATATACCTCGATGGATcctaaattcaaatcaaaatgtgtAAGAAAAGTTGATCTCTCTGACAAAAAGTGGTCGAAGGTGGGTCAAGAAGCTGTTTTATCCATTGATATAAAACCCGGTAGACTGTCAAATACAGCAACAAAGATGGGGTTTTGCCCTCAGTCGAAAGCTGCCCATAAGAAATTGGACGCTGTTCAGAGGAGGCACCGTATTGAAGATGAACTAAGCGCACAGGCTAAAGCGGGCTTGAGAATGTTGTTTTCACTTGATGAACAAAGAGTGGCTCAAGCTTTCACTTCATCTTTCCCtagttttgtgaaaataatgaaaaaattcaaTGTCAGTGGGTCATACACTTTGAAAATCCCACACCAATTTTCAGCAGCACATCTCCCAAGCTACAAAACAGAAGTTGTGCTTCGTAATTTAAGAGGTAGAAGTTGGACTGTGAACTCTGTCCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGCGGGGGCTGGATGGCCTTCGTTCGTGATAATGACATCAATTTTGGGGACACATGCATTTTCGAACTTATTGGTAAGTGTGAGATGCAGGTATATATATCTGGGGTTGGAAAAGAAGGGCTCGACTATCATAATGGGGACATAAACTCCAATAGATTGACTATTGTTCCATCTACCAGCAAACACTCTTGCCTGTG 1844 0.3948 MASESRQEKLDARRPQFYEFYSSTSNSERLKIPAGFMSHMEGKTSGLVSIMGPSGNTWHVQLIQEGDDLFFHHGWPAFVGDHLIECGDLLVFRYEGHLHFTVQVFDQSACQKEVAFYSECSQNSGDFNINGQKRDREDNSSLDVVAEVLLKKMRGSTCQNWKLNMDVIDKKLSQYEAVKPINMFREKEESSKETEQSAGPASDVAVSSRKEYVSENEEGAIRNRSGKKDDQYMCHGVCLSNLSAHDEKKVAQSFTSSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNYKTRIILHNLKGEHWAVNSVPTTRVHTSHTLCGGWMAFVRGNNIKIGDICIFELVQECELRVRIVGAGKDGLDCQCGKLAITGPSVGHAFASHKTSKYTSMDPKFKSKCVRKVDLSDKKWSKVGQEAVLSIDIKPGRLSNTATKMGFCPQSKAAHKKLDAVQRRHRIEDELSAQAKAGLRMLFSLDEQRVAQAFTSSFPSFVKIMKKFNVSGSYTLKIPHQFSAAHLPSYKTEVVLRNLRGRSWTVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELIGKCEMQVYISGVGKEGLDYHNGDINSNRLTIVPSTSKHSCL 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00767 614 Gene3D - 8 110 IPR015300 -
Bva10g00767 614 SMART B3_2 17 108 IPR003340 GO:0003677
Bva10g00767 614 SMART B3_2 261 357 IPR003340 GO:0003677
Bva10g00767 614 SMART B3_2 490 586 IPR003340 GO:0003677
Bva10g00767 614 Pfam B3 DNA binding domain 22 107 IPR003340 GO:0003677
Bva10g00767 614 Pfam B3 DNA binding domain 261 353 IPR003340 GO:0003677
Bva10g00767 614 Pfam B3 DNA binding domain 490 578 IPR003340 GO:0003677
Bva10g00767 614 CDD B3_DNA 488 582 IPR003340 GO:0003677
Bva10g00767 614 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Bva10g00767 614 SUPERFAMILY DNA-binding pseudobarrel domain 483 584 IPR015300 -
Bva10g00767 614 MobiDBLite consensus disorder prediction 186 209 - -
Bva10g00767 614 SUPERFAMILY DNA-binding pseudobarrel domain 12 110 IPR015300 -
Bva10g00767 614 PANTHER B3 DOMAIN-CONTAINING 465 603 - -
Bva10g00767 614 PANTHER B3 DOMAIN-CONTAINING 7 466 - -
Bva10g00767 614 CDD B3_DNA 22 106 IPR003340 GO:0003677
Bva10g00767 614 ProSiteProfiles B3 DNA-binding domain profile. 490 586 IPR003340 GO:0003677
Bva10g00767 614 CDD B3_DNA 259 353 IPR003340 GO:0003677
Bva10g00767 614 Gene3D - 243 356 IPR015300 -
Bva10g00767 614 Gene3D - 475 585 IPR015300 -
Bva10g00767 614 ProSiteProfiles B3 DNA-binding domain profile. 261 357 IPR003340 GO:0003677
Bva10g00767 614 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 465 603 - -
Bva10g00767 614 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 7 466 - -
Bva10g00767 614 SUPERFAMILY DNA-binding pseudobarrel domain 254 355 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00767 Bva-Chr10 6184697 6189247 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva10g00767 B3 7.6e-15 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00767 10 6184697 6189247 Bva10g00767 10 6184697 6189247 ECH