Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00752 ATGAATAGGTGCTCCTCCACTTCATCTAGCTCTGACACTTGTTCTTCGGAGTCTAATTCCTTGTCGGCAAGAAATtgcaagaaagaagagagaatcAAAGGTCCGTGGAGCGCTGAAGAGGACCGGATTCTGACTCGACTGGTTGAAAGATACGGACCGCGCAACTGGTCATTGATAAGCCGTTATATAAAGGGGAGGTCCGGCAAGTCTTGTAGGCTTAGATGGTGTAACCAGCTGTGTCCGAGCGTGCAGCACCGCCCGTTCTCGGCGGAAGAAGACGAGACCATTCTAGCGGCACATGCCCAATATGGTAACAGGTGGGCCACCATTGCACGCCTGTTACCGGGTCGAACTGACAATGCCATCAAGAATCACTGGAACTCCACGCTCAAGCGAAGGGTAAAGCAAGGAGGAGCAACAAGAGGAGAAGAAGCTCTTGGTATAACTCGCCAAACGGAAACGGAAAGGGAAAATTCTGCGGGATCTTTGCACCCCTGCacgggattgggattgggattgggatttgACGATGACCCATTGACCGCGTTGACTCTGGCACCCCCTGGAACTGCCAATGCCACGCCCGATCACCCACCCACCCCCACCCAGACCCAGTTTTGGGATGTCGTGAGAAATGTGATTGCCAAAGAAGTTAGAGAATATGTATCTTGTACGTTTTCTGATAATTCCGCTTTTCACTG 701 0.4807 MNRCSSTSSSSDTCSSESNSLSARNCKKEERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLCPSVQHRPFSAEEDETILAAHAQYGNRWATIARLLPGRTDNAIKNHWNSTLKRRVKQGGATRGEEALGITRQTETERENSAGSLHPCTGLGLGLGFDDDPLTALTLAPPGTANATPDHPPTPTQTQFWDVVRNVIAKEVREYVSCTFSDNSAFH 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00752 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 83 IPR017930 -
Bva10g00752 233 SUPERFAMILY Homeodomain-like 31 126 IPR009057 -
Bva10g00752 233 CDD SANT 35 77 IPR001005 -
Bva10g00752 233 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 218 - -
Bva10g00752 233 Gene3D - 86 160 - -
Bva10g00752 233 Gene3D - 32 84 - -
Bva10g00752 233 SMART sant 84 132 IPR001005 -
Bva10g00752 233 SMART sant 32 81 IPR001005 -
Bva10g00752 233 CDD SANT 87 130 IPR001005 -
Bva10g00752 233 PANTHER MYB PROTEIN-RELATED 1 218 - -
Bva10g00752 233 ProSiteProfiles Myb-like domain profile. 28 79 IPR001005 -
Bva10g00752 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 134 IPR017930 -
Bva10g00752 233 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Bva10g00752 233 Pfam Myb-like DNA-binding domain 36 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00752 Bva-Chr10 6117173 6118061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00752 30 174 MYB Transcription Factor Family AT5G67300 65.517 5.19e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva10g00752 Myb_DNA-bind_6 9.8e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00752 10 6117173 6118061 Bva06g02057 06 13708278 13709434 BWGD
Bva10g00752 10 6117173 6118061 Bva10g00752 10 6117173 6118061 ECH