Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00746 ATGCACTCTGATTCCCAACAACAGCAACAGTCCGAACAGAACAATCAACGCCAAAAACAAACGCAGACACACACGCCGCCACCGCCACTACCACTGCCACAGCAGTGGGTGCCGATGCAGTATCCGGCGGCGGCCGTGGTAATGCAGCATCACATGTTACCACCTCAACATTAcgcgccgccgccgccgcagCACTATATGCCTTATCACCAGTACCAGCAACTACCACATGTATCTCATTCGCAGCAGCATCAGCATCGGGAATCAAGCGGCGAGAACAAAACGATCTGGGTCGGCGATTTACATCATTGGATGGACGAGAATTATCTCCATCGCTGCTTCGCTTCTACGGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAAACTGGTCTATCGGAGGGTTATGGATTTGTGGAATTCTATTCGCATGCTACAGCTGAGAAAGTTTTACAGAATTATGCTGGCATTTTGATGCCCAACACAGAACAACCTTTCCGCCTAAACTGGGCAACATTTAGCACGGGTGATAAGCGTTCAGATAATGTTCCtgatctttctatttttgtagGAGATTTAGCAGCAGATGTAACAGATAGCATGTTGCATGAAACTTTTTCTAGTAGATATCCTTCTGTTAAAGCTGCGAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCACAGGCCATGTCTGAAATGAATGGTGTTTATTGTTCTAGCAGGGCTATGCGTATTGGTGCTGCAACTCCGCGAAAATCATCTGGCTATCAGCAGCAAGGAGGCCATGTTTCAAATGGCTCTTCTAACCAATCTGAAGCAGATTCAACAAACACGACTATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGAAGATCTTAGGCAATCTTTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGCTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAAGCGTTGCAGAAGCTAAATGGAACAACTATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGCAGTTTAGAATGGATTTTGGCAACCCATGGAGCGGGGCGTACTATGGAGGCCCTGTGTATGATGGTTATGGATATGCTTTGCCACCACCTCATGACCCAAGCATATATGCTGCTGCATATGGGGCTTATCCTATCTATGGTGGACACCAACAGCAAGTAAGCTG 1277 0.4424 MHSDSQQQQQSEQNNQRQKQTQTHTPPPPLPLPQQWVPMQYPAAAVVMQHHMLPPQHYAPPPPQHYMPYHQYQQLPHVSHSQQHQHRESSGENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMSEMNGVYCSSRAMRIGAATPRKSSGYQQQGGHVSNGSSNQSEADSTNTTIFVGGLDPNVTDEDLRQSFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQQFRMDFGNPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPIYGGHQQQVS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00746 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Bva10g00746 425 MobiDBLite consensus disorder prediction 1 35 - -
Bva10g00746 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 29 424 - -
Bva10g00746 425 SUPERFAMILY RNA-binding domain, RBD 170 277 IPR035979 GO:0003676
Bva10g00746 425 CDD RRM3_NGR1_NAM8_like 293 364 - -
Bva10g00746 425 MobiDBLite consensus disorder prediction 265 296 - -
Bva10g00746 425 Gene3D - 174 280 IPR012677 -
Bva10g00746 425 MobiDBLite consensus disorder prediction 267 296 - -
Bva10g00746 425 Gene3D - 93 173 IPR012677 -
Bva10g00746 425 MobiDBLite consensus disorder prediction 1 23 - -
Bva10g00746 425 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 29 424 - -
Bva10g00746 425 SUPERFAMILY RNA-binding domain, RBD 281 395 IPR035979 GO:0003676
Bva10g00746 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 163 IPR000504 GO:0003723
Bva10g00746 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 258 IPR000504 GO:0003723
Bva10g00746 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 359 IPR000504 GO:0003723
Bva10g00746 425 SMART rrm1_1 188 262 IPR000504 GO:0003723
Bva10g00746 425 SMART rrm1_1 295 362 IPR000504 GO:0003723
Bva10g00746 425 SMART rrm1_1 95 170 IPR000504 GO:0003723
Bva10g00746 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 366 IPR000504 GO:0003723
Bva10g00746 425 SUPERFAMILY RNA-binding domain, RBD 59 176 IPR035979 GO:0003676
Bva10g00746 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Bva10g00746 425 Gene3D - 281 397 IPR012677 -
Bva10g00746 425 CDD RRM2_SECp43_like 186 265 - -
Bva10g00746 425 CDD RRM1_SECp43_like 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00746 Bva-Chr10 6081224 6084949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00746 188 373 Eukaryotic Initiation Factors Gene Family AT4G34110 31.472 1.39e-18 86.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00746 10 6081224 6084949 Bva06g02063 06 13745693 13749410 BWGD
Bva10g00746 10 6081224 6084949 Bva10g00746 10 6081224 6084949 ECH