Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00707 ATGGCTCTTCTGCTAGACAATTGCGAGGGAATTTTACTCTCTCTAGACTCTCACAAATCGGTGCCAGCACCCTTCCTAACAAAGACATACCAGCTAGTAGATGATCCCACCACCGATCACATAGTCTCTTGGGGTGAAGACGACACTACCTTCGTCGTTTGGCGTCCGCCAGAGTTCGCCAGGGATCTTCTTCCCAACTATTTCAAGCACAACAACTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATgGTTTTAGAAAGATTGTACCTGACAGATGGGAGTTCGCAAACGAATTCTTCAAGAAGGGAGAGAAGCACCTGCTGTGTGAGATCCATAGAAGAAAAACTGCTCAGCCTCAGCAGGTGGCTATCAATCATCACAACCATCATCATCCCCATTCTCCACTTGGAGTCAACGTCCCCACTTTCTTTCCCTTCACCAACAGAGTCAGCATCTCACCTCCCAATGACTCTGATGACCTAGCCAATTGGTGTGATTCACCGCCACGCACTTCTCCAAGATCAGTAGCGGCTGCTACAGCCGTTTCTTCGGTCATTAATGGCGCTAACTACAATACTTCTGTCACTGCGCTGTCGGAGGACAACGAAAGACTCAGGCGAAGCAACAACTTGCTCATGTCTGAGCTTGCCCACATGAAGAAGCTTTATAACGACATAATTTACTTCGTGCAGAACCATGTGAAGCCTGTCTCTCCTAGCAATTCTTACCCTTCTTCTTTACTACTCTGCAATACGCCACAACAACAGTCAGCAGCATCTCCTTTAACAAGTTCGAATATTTCCATGGTGCAAAGGCCTATGAACCAGCTTCTGGGGTTTTATTCTAACAACCCTAAGCAACCCCCTCAAGCTCATGTGTTGAACTCCCCGACCAATACATCAAAGAGTTCCATAACCATTGTTGAAGAGCCTAGCAGTAACAGCTGCAAGACGAAGCTTTTTGGTGTATCTCTTCAATCTAAGAAAAGGGTGCACCCCGAGTACGGTTCTAATCTCGTGAATTTGGAGACGACGAACAAGGCTCGTTTGGTCTTGGAAAAGGATGACTTGGGCTTGAATCTTATGCCTCCTTCCACTTGTTA 1103 0.4678 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQVAINHHNHHHPHSPLGVNVPTFFPFTNRVSISPPNDSDDLANWCDSPPRTSPRSVAAATAVSSVINGANYNTSVTALSEDNERLRRSNNLLMSELAHMKKLYNDIIYFVQNHVKPVSPSNSYPSSLLLCNTPQQQSAASPLTSSNISMVQRPMNQLLGFYSNNPKQPPQAHVLNSPTNTSKSSITIVEEPSSNSCKTKLFGVSLQSKKRVHPEYGSNLVNLETTNKARLVLEKDDLGLNLMPPSTC 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00707 367 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva10g00707 367 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Bva10g00707 367 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva10g00707 367 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva10g00707 367 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva10g00707 367 PANTHER BNAC06G00310D PROTEIN 12 366 - -
Bva10g00707 367 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva10g00707 367 Gene3D - 17 116 IPR036388 -
Bva10g00707 367 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva10g00707 367 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 366 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00707 Bva-Chr10 5872512 5874199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00707 1 366 HSF AT1G46264 54.264 1.73e-119 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva10g00707 HSF_DNA-bind 3.2e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00707 10 5872512 5874199 Bva06g02100 06 13912789 13914408 BWGD
Bva10g00707 10 5872512 5874199 Bva10g00707 10 5872512 5874199 ECH