Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00705 ATGGCTAATATGTATGGAACCCATCCATCTTTAGTCCCAGGGCTGGCTTCTTCTGATACCGCAGAGGTGTCTACCCTGTTGAACCAACTCATCCGCCACAAATCATCCTCTTCTTGCATGTCCTCGAAAACCAAAACCTTATCTCCACCGTGGCTGTCTCCGCCAGTGAGGGTGGTGGGGACCGCGGGGTTTCTCCACCTGGACTCCGACGATCCATTTGAGAATCCTCACAGGTTTGCTCAATTGGAGTTGGGAACCGATTCCGGGTCACATTACCCGCTTAAACTTGGAAAGTCTCTTGCCGCCGGTTCCTCCActactttcaatttttctgatCCTTATGATTATATTCCCATTCCGGCTCAGGCTCATGTTGAAGAGGCCACAGAAAACCAGCTTTTATCCAACGCTGTTAAGGATTCTGACGCAAACTCTTCCTTGAAACAAAATAGGACATCGCCGGACTGTGATTTTATTTCCCCTCTTGAGAAGAATACCGAGGTCTCAGAGTTGCCATCAAAGCCAGTCTCACCACGTACTTCATCAAAGAGAAGCAGAGCCGCAGAGGTCCATAATTTGTCGGAAAAGAGAAGGAGGAGTAGGAtcaatgagaaaatgaaagccTTGCAGAATTTGATCCCAAATTCTAATAAGACGGACAAAGCTTCAATGCTAGATGAGGCGATTGAATATTTGAAACAGCTTCAGCTTCAAGTACAAATGTTAATGATGAGAAATGGTTTAAGCTTGCACCCAATGTGTTTACCAGGAGCTCTGCCTCCAACGGTATTGCCTCAGagtgaattgaattttgaccAGAGTCATGAGTTTCAGAATTCTAGCAGTGGAGTTGCGTCATCTGTCAATGCTGAAGGCTTGGTGCAATCTGCATTTAGTCTTCCAAAATATTCCACAATCTCAAATCCATCTGTTTTCCAACCATCCGTTGATGCTCATTTCGGACACTACAACCGTTCAACATCATCCAAGGATGAACCTGGTGACAGCAAGGCCCAACTGCTTTTGGATACGACCAAGATTGGAAAAACATCTTCTTCGGATGTGTCTTA 1070 0.4364 MANMYGTHPSLVPGLASSDTAEVSTLLNQLIRHKSSSSCMSSKTKTLSPPWLSPPVRVVGTAGFLHLDSDDPFENPHRFAQLELGTDSGSHYPLKLGKSLAAGSSTTFNFSDPYDYIPIPAQAHVEEATENQLLSNAVKDSDANSSLKQNRTSPDCDFISPLEKNTEVSELPSKPVSPRTSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMCLPGALPPTVLPQSELNFDQSHEFQNSSSGVASSVNAEGLVQSAFSLPKYSTISNPSVFQPSVDAHFGHYNRSTSSKDEPGDSKAQLLLDTTKIGKTSSSDVS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00705 356 Pfam Helix-loop-helix DNA-binding domain 190 236 IPR011598 GO:0046983
Bva10g00705 356 MobiDBLite consensus disorder prediction 166 183 - -
Bva10g00705 356 MobiDBLite consensus disorder prediction 140 156 - -
Bva10g00705 356 Gene3D - 181 245 IPR036638 GO:0046983
Bva10g00705 356 PANTHER TRANSCRIPTION FACTOR SPATULA 91 333 - -
Bva10g00705 356 MobiDBLite consensus disorder prediction 140 198 - -
Bva10g00705 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Bva10g00705 356 MobiDBLite consensus disorder prediction 323 356 - -
Bva10g00705 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 246 IPR036638 GO:0046983
Bva10g00705 356 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 91 333 IPR031066 -
Bva10g00705 356 MobiDBLite consensus disorder prediction 184 198 - -
Bva10g00705 356 CDD bHLH_AtPIF_like 186 248 - -
Bva10g00705 356 SMART finulus 192 241 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00705 Bva-Chr10 5855673 5858279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00705 186 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 59.854 3.74e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva10g00705 HLH 4e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00705 10 5855673 5858279 Bva10g00705 10 5855673 5858279 ECH