Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00704 ATGCAAGGACAGAGGGGTGCACTTGGTTCTTTGCCTGAAACCTTACAATTCGATTGTGGATCTACATCAAGTAATGCCACAGTGGATCAGCAGATTTGCTGGAATAATATGAGGAATCCTGCAGAAAACCGAATACCTGAATATATACTTGCACCTGGTGATGTGAACACATCATATGTGAATTCTATAAACCATGAATGGCAGAACTTGAGTGGATGGAGCTTAGGTGAGTCAAGTTCTAGTAATACACAGAATGAGATTAATCATAATGAGCAGAAAAGAGAACTTGGATGGTCTTCTTCAGTAAGTAATGTTGCTGTACCTGGTCTAAGATTGGAAGAAAGGCGCTTTGAATCAACTAATATTCTTCCATCTGACAGTGCCAATCCAAGTGCAATCTACAGGCGGGTTTCCCATTCACATGCCATGTCAcagaattttaacttaaatgcAGGTATGATGGATAATGACAGTGATTCTGTTCAACATGCAGAGCATCCTAGCACACACAAGTCTAGTGGATCTGTAAATGAGCATCCTCCACCTGCTGTTGGTTCTGGTCCTTTTTTGCTTCCTTCCGGAAGTAACAGCTTCTTGGTAGAAGATAATGATGGTAGGCCAGGTTGTTCTATGGACACTCGTCGTGTATCTTGCAAGCGAAAAGCTGTTGAAGGGAGTATTGGACAATCTTCAGATGGAGGAAGTTCTAGCTACAGTCATCTGACAGCTAGTAGTTCTTGGCCCACTCTTCCTGCTCAGGGTAATGCAAGTAGCAGTTTAAGCATATCTGCTTCATCAGAACAGGTAAATGCAAGACTTGGCCTGCATGTGGGGGATGACTCCTCTGAAACCCTTCCTGATTCAAATGTTGAAAGCTTCCACCGAAATTTCCGTTTGAGGATAAATCCTTCAAACCAAGATTCAATTCCTCCCACTACATTCTCATCTGGGAGTGTGATAAGGCATTCTAATGTTTCGTCCTTTCCCATGTCTCAAAGGTTTCCAGTTGATAATTCTTTGGACTTGAGGTCAGCACCAGCAGTGGATAATATGATTCCTCAAAGCCAGCCCCTTGTGATTCATGTTCCTCCTTTGCCAAGGAATGTGCAATCATTTAGGTGGAATGGTGGCTCTAGCTCAAGAAATAGCCATTCATCGAGCCCAATTATTTGTGCTGACAGGGATAATGTGCAACATGAAGAAGCAAGCTCAAGAAATATGCCTAGAAACATGTTAGAGCAACCAGTGTTTGTACCTGCAACTGATTTAAGAAGTTTGGTTCGAAATCCAATAATTAGGTCTTCTAGTAGTgcaaattttagtatttcagGAAATGTTGCTTCTTCATCACGGGCTGGATCTAGTTCTGCTGTCAATCCTCCATCTGCCTCAACCTGGGTTTCTCGTCCTAATCCTCCGCAATACCCACGGAGGTTATCTGAATATGTTCGTCGATCATTGTTTTCTCCGGGTTCCGAAGCTGCTGCAGGTCAGAGCAATAATTATTCTTCTTTGCGCTCTGGTCCTGCAGCTTCATCTGAAGCTAGGATTTTTGCATCTGGTTCTAGCAGCCAGGGACACAATCAGTCACATCCGAGATCATCCTCTTGGATGGAGAGGCAAAGTGATGCTGAATTTGGAATTCCCCATTCATTGCGTACTTTGGCTGTTACTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTGCGCAATGTTCTGGGCCTCATGCGTAGGGGTGGGAGCCTGCGATTCGAGGATGTCATGATCCTTGACCAGTCAGTATTTTCTGGTATGGCTGATATTCACGATAGACACAGGGATATGAGACTTGATGTCGATAACATGTCTTACGAGGAGTTACTGGCTCTCGAAGAGCGTATCGGAAATGTGAGTACCGGCTTGAGTGAGGAAACGGTATTGAAACTTTTGAAACAGAAGAAGTATTCAGTTGAAACTGGAACCCAGGTTGAGGCAGAACCCTGCTGTGTTTGCCAGGAGGAGTATAACGATGGAGACGACATTGGAACGCTTGATTGCGGGCATGATTACCATGCCGAGTGTATTAAACAGTGGTTAATGCACAAGAATCTGTGTCCCATTTGCAAGACAACTGGCTTGGCAACATG 2126 0.4341 MQGQRGALGSLPETLQFDCGSTSSNATVDQQICWNNMRNPAENRIPEYILAPGDVNTSYVNSINHEWQNLSGWSLGESSSSNTQNEINHNEQKRELGWSSSVSNVAVPGLRLEERRFESTNILPSDSANPSAIYRRVSHSHAMSQNFNLNAGMMDNDSDSVQHAEHPSTHKSSGSVNEHPPPAVGSGPFLLPSGSNSFLVEDNDGRPGCSMDTRRVSCKRKAVEGSIGQSSDGGSSSYSHLTASSSWPTLPAQGNASSSLSISASSEQVNARLGLHVGDDSSETLPDSNVESFHRNFRLRINPSNQDSIPPTTFSSGSVIRHSNVSSFPMSQRFPVDNSLDLRSAPAVDNMIPQSQPLVIHVPPLPRNVQSFRWNGGSSSRNSHSSSPIICADRDNVQHEEASSRNMPRNMLEQPVFVPATDLRSLVRNPIIRSSSSANFSISGNVASSSRAGSSSAVNPPSASTWVSRPNPPQYPRRLSEYVRRSLFSPGSEAAAGQSNNYSSLRSGPAASSEARIFASGSSSQGHNQSHPRSSSWMERQSDAEFGIPHSLRTLAVTGEGSSRLVSELRNVLGLMRRGGSLRFEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKLLKQKKYSVETGTQVEAEPCCVCQEEYNDGDDIGTLDCGHDYHAECIKQWLMHKNLCPICKTTGLAT 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00704 708 MobiDBLite consensus disorder prediction 75 95 - -
Bva10g00704 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 707 - -
Bva10g00704 708 MobiDBLite consensus disorder prediction 228 263 - -
Bva10g00704 708 MobiDBLite consensus disorder prediction 442 471 - -
Bva10g00704 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 707 IPR045191 GO:0061630
Bva10g00704 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 705 IPR013083 -
Bva10g00704 708 MobiDBLite consensus disorder prediction 207 221 - -
Bva10g00704 708 SUPERFAMILY RING/U-box 660 704 - -
Bva10g00704 708 MobiDBLite consensus disorder prediction 149 263 - -
Bva10g00704 708 MobiDBLite consensus disorder prediction 371 391 - -
Bva10g00704 708 ProSiteProfiles Zinc finger RING-type profile. 661 702 IPR001841 -
Bva10g00704 708 MobiDBLite consensus disorder prediction 513 540 - -
Bva10g00704 708 SMART ring_2 661 701 IPR001841 -
Bva10g00704 708 Pfam Ring finger domain 661 702 IPR001841 -
Bva10g00704 708 CDD RING-H2_TTC3 660 702 - -
Bva10g00704 708 MobiDBLite consensus disorder prediction 442 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00704 Bva-Chr10 5848824 5854137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00704 1 708 C3H Transcription Factor Family AT2G15530 34.718 9.71e-95 307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00704 10 5848824 5854137 Bva06g02103 06 13933045 13937932 BWGD
Bva10g00704 10 5848824 5854137 Bva13g00308 13 1453197 1458374 ECH
Bva10g00704 10 5848824 5854137 Bva14g00386 14 1920363 1925687 ECH
Bva10g00704 10 5848824 5854137 Bva10g00704 10 5848824 5854137 ECH