Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00700 ATGGCGCAGATTCAGGTGCAGCATCAGAGTCCTCCCTCGGCTCCCAATGGTGTGGCACCGACTCCTGGCGCGAATCAGTTTGTGACTACGTCGTTATATGTCGGGGATCTTGACCAGAATGTGAACGATTCGCAGCTTTACGATCTCTTCAACCAGGTCGGGCAAGTTGTCTCTGTTCGGGTCTGCAGGGACTTGACCAGCCGTCGGTCCCTCGGTTACGGATATGTTAATTACAGCAACCCTCAGGATGCGGCAAGAGCAATTGATGTACTGAATTTCACTCCATTGAACAGCAAACCAATTAGGATCATGTATTCTAATAGGGATCCTAGTATTCGTAAGAGTGGTAcagcaaatatatttattaagAATTTGGATAAGGCCATTGACCACAAAGCCTTACATGAGACCTTTTCCACTTTTGGAAATATTCTTTCTTGCAAGATAGCAACTGATGCTTCTGGCCAGTCCAAAGGATATGGTTTTGTACAATTTGACAACGAAGAGTCTGCACAGAATGCAATTGACAAGTTAAATGGCATGCTTCTAAATGATAAACAAGTCTTTGTGGGACATTTCCTGCGGAAGCAAGatagagaaaatgattttagttggacaaaatttaataatgtgtATGTGAAAAACCTGTCAGAGTCTACGACAGATGATgacttgaagaaaatttttggagAATATGGGACCATTACTAGTGCTATAGTAATGAGAGATGCTGATGGAAAATCGAAGTGTTTTGGTTttgtcaattttgaaaatgctGATGATGCTGGTACAGCTGTTGAGGCACTTAATGGaaagaaatttgatgataACGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAAAGAGAGCTTGAACTGAAGGGAAAATTCGAGCAGAGTGTCAAGGAAGCTGCTGACAAATATCAAGGCTTAAACTTGTATCTCaagaacttggatgatacaaTTGATGATGACAAACTTAAGGAACTGTTCTCTGAGTTTGGTACAATAACTTCATACAAGATTATGCGGGACCCAAATGGAATCAGTAGAGGATCGGGATTTGTTGCATTTTCGATTCCTGAGGAAGTATCTCGAGCTCTTGCTGAGATGAATGGTAAAATGATTGCTGGAAAACCTCTCTATGTTGCTCTTGCACAGAGGAAAGAAGACAGAAGAGCAAGGTTACAGGCACAATTTTCACAAATGAGGCCTGTTGCGATGTCTCCTGTTGCCCCTCGTTTGCCAATGTACCCTCCCGGTGCTCCGGGTCTAGGACAACAATTTTTGTATGGACAAGCTCCCCCGGCCATCATTCCTCCACAAGCGGGGTTCGGTTACCAACAACAACTTGTTCCTGGGATGAGAGCTGGTAGTGCTCCAATGCCAAACTTCTTTGTTCCCTTGGTTCAGCAGGGTCAGCATGGCCAGCGGCCTGGTGGACGCCGAGGAGCCGGTCCAGTGCAACAACCTCAGCAGGCAGTGCCACTGATGCAGCAGCAGATGCTTCCAAGGGGACGTGTCTACCGTTACCCTCCTGGTCGTAGCATGCAAGATGTTCCAATGCCAGGTGTAGTTGGAGGAATGCTTCCTGTCCCTCATGAAATGGCTGGTGTGCCAATTCGGGATGCTCAGCCAATGCCCATTCAGGCCTTAGCAACTGCTCTTGCAAATGCCCCTCCTGAGCAGCAGAGGACTATGCTGGGCGAAGCTTTATACCCGCTCGTGGATCAGTTGGAGCATGATGCTGCAGCCAAGGTCACAGGCATGCTTTTGGAGATGGACCAGCCTGAGGTATTGCATCTGATCGAGTCGCCAGACGCTCTCAAGGCGAAAGTGTCTGAGGCCATGGATGTCCTTAGAAATGTTGCCCAGCAGCAAGTTGACAGCCCTGCTGATCGACTAGCCTCACTCTCTCTCAACGACAATCTTGTCTCTTA 1943 0.4452 MAQIQVQHQSPPSAPNGVAPTPGANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARAIDVLNFTPLNSKPIRIMYSNRDPSIRKSGTANIFIKNLDKAIDHKALHETFSTFGNILSCKIATDASGQSKGYGFVQFDNEESAQNAIDKLNGMLLNDKQVFVGHFLRKQDRENDFSWTKFNNVYVKNLSESTTDDDLKKIFGEYGTITSAIVMRDADGKSKCFGFVNFENADDAGTAVEALNGKKFDDNEWYVGKAQKKSERELELKGKFEQSVKEAADKYQGLNLYLKNLDDTIDDDKLKELFSEFGTITSYKIMRDPNGISRGSGFVAFSIPEEVSRALAEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMRPVAMSPVAPRLPMYPPGAPGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRAGSAPMPNFFVPLVQQGQHGQRPGGRRGAGPVQQPQQAVPLMQQQMLPRGRVYRYPPGRSMQDVPMPGVVGGMLPVPHEMAGVPIRDAQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVSEAMDVLRNVAQQQVDSPADRLASLSLNDNLVS 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00700 647 SUPERFAMILY RNA-binding domain, RBD 308 406 IPR035979 GO:0003676
Bva10g00700 647 PANTHER POLYADENYLATE-BINDING PROTEIN 19 631 - -
Bva10g00700 647 SUPERFAMILY RNA-binding domain, RBD 4 114 IPR035979 GO:0003676
Bva10g00700 647 Gene3D - 1 117 IPR012677 -
Bva10g00700 647 Gene3D - 195 296 IPR012677 -
Bva10g00700 647 Gene3D - 297 402 IPR012677 -
Bva10g00700 647 CDD RRM1_I_PABPs 31 110 - -
Bva10g00700 647 CDD RRM3_I_PABPs 208 287 - -
Bva10g00700 647 SMART rrm1_1 210 282 IPR000504 GO:0003723
Bva10g00700 647 SMART rrm1_1 313 385 IPR000504 GO:0003723
Bva10g00700 647 SMART rrm1_1 31 104 IPR000504 GO:0003723
Bva10g00700 647 SMART rrm1_1 119 191 IPR000504 GO:0003723
Bva10g00700 647 MobiDBLite consensus disorder prediction 1 22 - -
Bva10g00700 647 PANTHER RNA BINDING PROTEIN 19 631 - -
Bva10g00700 647 CDD RRM2_I_PABPs 116 192 IPR045305 -
Bva10g00700 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Bva10g00700 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Bva10g00700 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Bva10g00700 647 SMART rrm2_1 119 191 IPR003954 GO:0003676
Bva10g00700 647 SMART rrm2_1 210 282 IPR003954 GO:0003676
Bva10g00700 647 SMART rrm2_1 313 385 IPR003954 GO:0003676
Bva10g00700 647 SMART rrm2_1 31 104 IPR003954 GO:0003676
Bva10g00700 647 SUPERFAMILY PABC (PABP) domain 494 630 IPR036053 GO:0003723
Bva10g00700 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Bva10g00700 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Bva10g00700 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 187 IPR000504 GO:0003723
Bva10g00700 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Bva10g00700 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Bva10g00700 647 Gene3D - 545 628 - -
Bva10g00700 647 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 549 626 IPR002004 GO:0003723
Bva10g00700 647 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 31 622 IPR006515 GO:0003723
Bva10g00700 647 Gene3D - 118 192 IPR012677 -
Bva10g00700 647 SMART poly_2 561 624 IPR002004 GO:0003723
Bva10g00700 647 Pfam Poly-adenylate binding protein, unique domain 557 621 IPR002004 GO:0003723
Bva10g00700 647 SUPERFAMILY RNA-binding domain, RBD 119 290 IPR035979 GO:0003676
Bva10g00700 647 CDD RRM4_I_PABPs 311 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00700 Bva-Chr10 5835185 5839284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00700 1 642 Eukaryotic Initiation Factors Gene Family AT4G34110 66.154 0.0 848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00700 10 5835185 5839284 Bva13g00314 13 1484295 1488491 ECH
Bva10g00700 10 5835185 5839284 Bva14g00392 14 1947184 1952341 ECH
Bva10g00700 10 5835185 5839284 Bva10g00700 10 5835185 5839284 ECH