Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00697 ATGAATCCCCTATCCCTCCTCTGCAATGCAGTAGACGCACTCCGCCTAGAGTCCAGCCCTTCTGCACCTATCCTTCGCGGTGGCAAGCCAAAGAGCGGCAGCCTCCATTTCTGGTTCTCCCCTTCCATCAATTTCAGTAATAGAGTTTCGCTTTGCCTCCCATCAAAATCTCAACTTGGATGTTTTTCTTCCCGCTCGTGTCAAACCATGGCCTGCTCCGCTGCCGAAATCGACATGGTCAAGAACAAGGAAGGTATCTATGCCCCCAAGCAGAAAAAGGTCGCAGTCCTGTGGGACCTTGACAACAAACCTCCTCGTGGGCCGCCATATCAAGCTGCTGTGGCCTTACGACGGGCGGCACAGCGATTTGGCGACATTGTTGACATGTCTGCTTACGCTAATCGCCACGCATTTATTCATTTACCCGAACGGGTCCTTCGGGAACGCCGTGAGCGGAAGCAAATGGATATTCTTGAGCGTAAGGGAATAGTCATTCCCTCCGAAACGTACGTTTGTGGGGTCTGCGGCCGCAAGTATAAAACCAATTTTGACCTGAAGAAGCATTTCAAGCAGCTTCATGAACGAGAGCGTCAAAAGAAGCTCAGTCGGATGAGGTCGCTTAAAGGGAAAAAGCGCCAGCGTTATAAAGAGAGGCGCGCTGGAGTGTTTGTGAAGACGGTGGAGGATAAACCACAAGCTGCAGATTGGGCACTTAAGAGGCAGATGCAACACTCAATGAACCGTGGCATGGATTGGTTATTTTTGGTTTCGGACGATTCAGACTTCTCGGAGATGTTGAGGAGGGCGAAGGAGGCAAATTTGGGAACGGTGGTTGTGGGGGATTTTGACAGGGCATTAGGGCGGCACGAAGACTTGTGGATTTCCTGGATTGGAGTTGAGAATGGGGAGCTTTCTGAGAAAGATTTGGTGCCTAAGAACAGGAGGAGAAGAGATTCTTTTGCTAAAGATGACGGCTTATTTTCCATATCGCATTATGATGGAGATATTGATGGTCATAGCGATTTGGATGGGATTGTGGAGGAGCTTGTTGCCATGAGGACGGTGTTTAATGATGTGACGGATGCAGCATTTTCAGATGTGGATGGGGATGAAGAAGGGTGGGTTTCAGGGGAACTGAATGAGGATTATATGTTCGTGAATAGTGAAGATGAGGacacagaagaagaagaagaagggttCTATTG 1205 0.4822 MNPLSLLCNAVDALRLESSPSAPILRGGKPKSGSLHFWFSPSINFSNRVSLCLPSKSQLGCFSSRSCQTMACSAAEIDMVKNKEGIYAPKQKKVAVLWDLDNKPPRGPPYQAAVALRRAAQRFGDIVDMSAYANRHAFIHLPERVLRERRERKQMDILERKGIVIPSETYVCGVCGRKYKTNFDLKKHFKQLHERERQKKLSRMRSLKGKKRQRYKERRAGVFVKTVEDKPQAADWALKRQMQHSMNRGMDWLFLVSDDSDFSEMLRRAKEANLGTVVVGDFDRALGRHEDLWISWIGVENGELSEKDLVPKNRRRRDSFAKDDGLFSISHYDGDIDGHSDLDGIVEELVAMRTVFNDVTDAAFSDVDGDEEGWVSGELNEDYMFVNSEDEDTEEEEEGFY 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00697 401 PANTHER - 66 218 - -
Bva10g00697 401 PANTHER - 218 349 - -
Bva10g00697 401 ProSitePatterns Zinc finger C2H2 type domain signature. 172 193 IPR013087 -
Bva10g00697 401 Gene3D - 87 295 - -
Bva10g00697 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 198 IPR013087 -
Bva10g00697 401 PANTHER OS06G0166200 PROTEIN 66 218 - -
Bva10g00697 401 PANTHER OS06G0166200 PROTEIN 218 349 - -
Bva10g00697 401 CDD PIN_LabA-like 180 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00697 Bva-Chr10 5819008 5820377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00697 4 335 C2H2 Transcription Factor Family AT5G52010 56.712 3.05e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva10g00697 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00697 10 5819008 5820377 Bva10g00697 10 5819008 5820377 ECH