Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00653 ATGGCTCTCGAAGCTCTCAAATCCCCCACAGCCGCCGGCCCTTCTTTCGCCTTCGAAGACGCCACGCTTCACTGCGTGGAGCCATGGGCTAAGAGAAAGCGTTCCAAGCGTACCCGACTTGACCACCCTTCCTGTACCGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGTGGTGGCGGCGCTGCCGCTGTACCCACCTCCATTTCCGCCGCCTCAGACCGCCATAGCTCCCCTCAGGCTCGGGCTACTCCTGTTTCGTCTGGGACGGCGCCAGTAGCCACCACAGACTCCTCCGGCGCTACCGTCGAGCACAGTTACAAGTGCTCTGTTTGTGACAAAGCCTTCTCCTCTTACCAAGCTCTTGGCGGACATAAGTCCAGTCACCGAAAGTTCGCTGCCGCCGGCGAAGATCACTCTTCCTCCTCCGCCGTCACCACAACTTCTGCGAACACCACAACTACGACATCCAATGGTGGAGTTAAGACCCACGAGTGTTCCATCTGCCACAAGTGCTTCCCCACCGGACAGGCCCTGGGTGGACACAAGCGTTGCCACTACGAAGGCGGTGCTGGCGGCGGTAGCAGTGCTATCACTGCCTCCGAAGGCGTCGGTTCCACTCATACCGTCAGCCACAGCCAGCGCGACTTCGATCTGAACCTCCCCGCCTTGCCGGACTTTTCGCCAAAATTCTTCGTTTCATCAGGGGACGACGAAGTCGAAAGCCCTCTGCCAGCGAAGAAGCCCCGACTTTTGATAACACCCAAGATTGAAATTGGTCAAAATCACTG 797 0.5834 MALEALKSPTAAGPSFAFEDATLHCVEPWAKRKRSKRTRLDHPSCTEEEYLALCLIMLARGGGAAAVPTSISAASDRHSSPQARATPVSSGTAPVATTDSSGATVEHSYKCSVCDKAFSSYQALGGHKSSHRKFAAAGEDHSSSSAVTTTSANTTTTTSNGGVKTHECSICHKCFPTGQALGGHKRCHYEGGAGGGSSAITASEGVGSTHTVSHSQRDFDLNLPALPDFSPKFFVSSGDDEVESPLPAKKPRLLITPKIEIGQNH 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00653 265 MobiDBLite consensus disorder prediction 72 100 - -
Bva10g00653 265 PANTHER ZINC FINGER PROTEIN ZAT10 1 256 - -
Bva10g00653 265 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Bva10g00653 265 SMART c2h2final6 166 188 IPR013087 -
Bva10g00653 265 SMART c2h2final6 109 131 IPR013087 -
Bva10g00653 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 188 IPR013087 -
Bva10g00653 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 131 IPR013087 -
Bva10g00653 265 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Bva10g00653 265 MobiDBLite consensus disorder prediction 132 164 - -
Bva10g00653 265 MobiDBLite consensus disorder prediction 141 164 - -
Bva10g00653 265 Pfam C2H2-type zinc finger 109 133 - -
Bva10g00653 265 Pfam C2H2-type zinc finger 166 189 - -
Bva10g00653 265 Gene3D Classic Zinc Finger 106 188 - -
Bva10g00653 265 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 256 IPR044653 GO:0003700
Bva10g00653 265 SUPERFAMILY beta-beta-alpha zinc fingers 108 188 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00653 Bva-Chr10 5627324 5628435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00653 1 261 C2H2 Transcription Factor Family AT1G27730 47.407 5.17e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva10g00653 zf-C2H2_6 3.6e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00653 10 5627324 5628435 Bva06g02145 06 14131734 14132929 BWGD
Bva10g00653 10 5627324 5628435 Bva13g00378 13 1760047 1761083 ECH
Bva10g00653 10 5627324 5628435 Bva14g00471 14 2265342 2266353 ECH
Bva10g00653 10 5627324 5628435 Bva10g00653 10 5627324 5628435 ECH