Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00651 ATGGAATCCGTTGGAGCTTTCCCTTATGGAGAGTGGGATTGCTTTGCTAGAATGTCTGCAGATGGAGAGCTTGATTACTCACCACAATTTCTGGCTCATAGTTCATTTCTGTTTGGGGAGGATGATGGATTGAACATTGGAATACAACCCACgttttcttctgcttctgaAGCTGGGGAGAACGAGAATGAGAAAAACACCAGTTCATTTATCCCTACTGACATTTCAATGGAAGAGACTCTCAGCCTGAATGAAGATGGCAGCACTGAGAGATTGGAGAATTCTGATTACAGGGAAGCAGAACGTACTGTCGTTCCTGCCAGACAGTTGCAGCTGAAAAGGAAGCTTGATGTGCCAGAACAGGAGGTGCCTggggaagagaaaagaaacgtCAACTCATCGGAGAATCAGAAGAAGAAGCCTCGTATATCAAGAGAAGTGCAACGATGCCAGAAAAATACACGCCCAAAGAAGAATCAGAAGCTTACCGAGAATGGTAACGAGGAAGAAGAGACCAATGCAGGATCAGATGGACAGAGCTCTAGCAGTTACAGCTCGGAGGATGTTGATGCAATATCTCAGGAAAACAGTGGAGGCACGAGTTCAACGTCTAAATCACCTATGGCTCTTAACGTAAATGGGAAGACAAGAGCCAGTAGGGGATCAGCAACAGATCCGCAAAGTCTTTATGCTAGGaaaagaagagagagaataaatgAACGACTAAGAATCCTCCAGAATCTTGTACCTAACGGAAGTAAGGTTGATATGAGCACAATGCTTGAAGAGGCAGTGCATTACGTGAAGTTTCTGCAACTCCAAATTAAGCTCTTAAGCTCAGATGACCTTTGGATGTACGCTCCAATTGCTTACAATGGAATCGATATTGGGCTCGATCTCAACCGGAAGATATCTCCACCACCACTGTG 929 0.423 MESVGAFPYGEWDCFARMSADGELDYSPQFLAHSSFLFGEDDGLNIGIQPTFSSASEAGENENEKNTSSFIPTDISMEETLSLNEDGSTERLENSDYREAERTVVPARQLQLKRKLDVPEQEVPGEEKRNVNSSENQKKKPRISREVQRCQKNTRPKKNQKLTENGNEEEETNAGSDGQSSSSYSSEDVDAISQENSGGTSSTSKSPMALNVNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGSKVDMSTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGIDIGLDLNRKISPPPL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00651 309 Pfam Helix-loop-helix DNA-binding domain 232 272 IPR011598 GO:0046983
Bva10g00651 309 SMART finulus 228 277 IPR011598 GO:0046983
Bva10g00651 309 MobiDBLite consensus disorder prediction 49 83 - -
Bva10g00651 309 CDD bHLH_AtIND_like 223 285 - -
Bva10g00651 309 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 63 306 - -
Bva10g00651 309 MobiDBLite consensus disorder prediction 84 103 - -
Bva10g00651 309 MobiDBLite consensus disorder prediction 172 226 - -
Bva10g00651 309 Gene3D - 224 280 IPR036638 GO:0046983
Bva10g00651 309 MobiDBLite consensus disorder prediction 49 234 - -
Bva10g00651 309 MobiDBLite consensus disorder prediction 113 168 - -
Bva10g00651 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 287 IPR036638 GO:0046983
Bva10g00651 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 271 IPR011598 GO:0046983
Bva10g00651 309 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 63 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00651 Bva-Chr10 5614923 5618460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00651 121 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 56.150 7.29e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva10g00651 HLH 3.5e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00651 10 5614923 5618460 Bva10g00651 10 5614923 5618460 ECH