Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00643 ATGGGAACCGAGAGTCCTGCCAATTACGCATACATGGGACGGAATTTCAGCGATTTGAGTATCAACGATAGTTCATCTTCTGCTTTCAGCGACTGCAACAGTGACAGATCCGGTGAATTTCCTACGGCTTCATCCCAAAGCCGGCGGCTACTGCTTGCTTGTGCTTCTGAGAATTCCGATGATCTTATTCGTCAGCTAGTCTCTGATCTCGAGTCCTGTTCGATTGATGAGCAAAAACAGGCGGCCATGGAGATCAGATTGCTCGCCAAGAACAAACCAGAAAATCGCCTAAAAATTGCGAAAGCTGGCGCAGTTAAGCCGTTAATTTCGCTTATATCTTCGCCCGATCTTCAGTTGCAGGAGAACGGCGTTACAGCGATTTTAAACCTTTCGCTGTGCGACGAGAATAAGCAGCTAATAGCATCATCGGGAGCCATTAAGCCTCTGGTTCGAGCCCTCAAGACAGGTAACTCGACGACTAAAGAGAACGCAGCTTGTGCTTTGCTTCGTCTCTCTCAAATGGAGGAGAACAAGATTACAATTGGAAGGTCAGGAGCCATTCCCCTCCTAGTGAACCTTCTAGAGAACAGCAGTTTACGCGGGAAGAAAGACGCATCGACGGCGCTGTATTCTCTTTGTTCAGTGAAGGAAAACAAGATCAGGGCGGTCCGAGCGGGAATCATGAAACCGTTAGCGGAATTAATGGCTGATTTCGGGTCAAGCATGGTGGATAAGTCAGCCTACGTTTTAAGCCTGCTGGTATCGATACCGGAGGCGAGGACATCGTTGGTGGACGAAGGAGGTATTCCAGTGTTGGTGGAAATTATTGAGGTGGGCTCGCAGAGACAGAAGGAAATCGCCGTGGTTGTCTTGTTACAAATTTGCGAGGATAGCGTGGCCTATCGTAACATGGTGGCTCGCGAAGGAGCGATTCCTCCTTTGATTGCTCTGTCGCAGTCCGGCACCAATCGCGCCAAGCTAAAGGCGGAGGCACTCATAGAGCTTCTACGGCAACCAAGATCCGGCGACGCCGCTGCACGTACGTCAGAAGTGTCGGTATA 1061 0.4995 MGTESPANYAYMGRNFSDLSINDSSSSAFSDCNSDRSGEFPTASSQSRRLLLACASENSDDLIRQLVSDLESCSIDEQKQAAMEIRLLAKNKPENRLKIAKAGAVKPLISLISSPDLQLQENGVTAILNLSLCDENKQLIASSGAIKPLVRALKTGNSTTKENAACALLRLSQMEENKITIGRSGAIPLLVNLLENSSLRGKKDASTALYSLCSVKENKIRAVRAGIMKPLAELMADFGSSMVDKSAYVLSLLVSIPEARTSLVDEGGIPVLVEIIEVGSQRQKEIAVVVLLQICEDSVAYRNMVAREGAIPPLIALSQSGTNRAKLKAEALIELLRQPRSGDAAARTSEVSV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00643 353 SMART arm_5 215 255 IPR000225 GO:0005515
Bva10g00643 353 SMART arm_5 92 132 IPR000225 GO:0005515
Bva10g00643 353 SMART arm_5 256 296 IPR000225 GO:0005515
Bva10g00643 353 SMART arm_5 133 173 IPR000225 GO:0005515
Bva10g00643 353 SMART arm_5 174 214 IPR000225 GO:0005515
Bva10g00643 353 Gene3D - 252 347 IPR011989 -
Bva10g00643 353 Gene3D - 179 251 IPR011989 -
Bva10g00643 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Bva10g00643 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 186 IPR000225 GO:0005515
Bva10g00643 353 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515
Bva10g00643 353 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515
Bva10g00643 353 Pfam Armadillo/beta-catenin-like repeat 175 214 IPR000225 GO:0005515
Bva10g00643 353 PANTHER U BOX DOMAIN-CONTAINING 1 346 - -
Bva10g00643 353 SUPERFAMILY ARM repeat 58 332 IPR016024 -
Bva10g00643 353 Gene3D - 55 178 IPR011989 -
Bva10g00643 353 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00643 Bva-Chr10 5592531 5594418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00643 27 345 U-box Gene Family AT2G23140 48.024 3.87e-88 276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00643 10 5592531 5594418 Bva06g02151 06 14163029 14169836 BWGD