Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00635 ATGGCATTTGCAGGAACAACCCAGAAGTGCATGGCTTGTGACAAAACCGTTTATCTGGTTGATAAGTTAACTGCAGATAACCGAGTTTACCACAAAGCTTGCTTCCGATGCCACCATTGCAAAGGAACCCTTAAGCTTAGCAACTACAACTCTTTTGAGGGAGTTCTGTACTGCAAGCCACACTTCGACCAGCTGTTCAAAAGAACTGGTAGCCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTaaaccagaaaaaaatattgatagcGAGAAACCTGCAGCGACCAAAGTCTTGGGTGTGTTTGCTGGAACCAGAGATAAATGCGCTGGCTGTCAGAAAACAGTCTATCCTACAGAGAAGGTTTCTGTGAATGGAACTCCTTACCACAAGAGTTGTTTTAAATGCACCCATGGAGGGTGTGTAATCAGTCCTTCCAATTACATTGCACATGAGGGCAGACTCTACTGCAAACACCACCATATCCAACTGATCAAGGAGAAGGGCAACTTAAGCCAGCTTGAAGGTAACCATGACAAGAGTGAAATGCAAGACAAAATCAACGGAGAAGTTGCCGCTGAGACATG 590 0.4339 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKNIDSEKPAATKVLGVFAGTRDKCAGCQKTVYPTEKVSVNGTPYHKSCFKCTHGGCVISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGNHDKSEMQDKINGEVAAET 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00635 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Bva10g00635 196 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Bva10g00635 196 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Bva10g00635 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Bva10g00635 196 MobiDBLite consensus disorder prediction 175 196 - -
Bva10g00635 196 Gene3D Cysteine Rich Protein 104 174 - -
Bva10g00635 196 Gene3D Cysteine Rich Protein 4 74 - -
Bva10g00635 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Bva10g00635 196 Pfam LIM domain 110 164 IPR001781 -
Bva10g00635 196 Pfam LIM domain 10 64 IPR001781 -
Bva10g00635 196 PANTHER OS06G0237300 PROTEIN 1 195 IPR045268 GO:0051015
Bva10g00635 196 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Bva10g00635 196 SMART lim_4 9 61 IPR001781 -
Bva10g00635 196 SMART lim_4 109 161 IPR001781 -
Bva10g00635 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Bva10g00635 196 CDD LIM2_SF3 110 170 - -
Bva10g00635 196 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE 1 195 - -
Bva10g00635 196 CDD LIM1_SF3 6 68 - -
Bva10g00635 196 MobiDBLite consensus disorder prediction 175 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00635 Bva-Chr10 5541985 5543793 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Bva10g00635 LIM 6e-13 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00635 10 5541985 5543793 Bva06g02161 06 14217509 14219102 BWGD
Bva10g00635 10 5541985 5543793 Bva10g00635 10 5541985 5543793 ECH