Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01289 ATGAATCATCTGACTGTTCATACAGAAGATCCTTTTTCCAGTTTACTGGAACTTGCTTCTAACAACGATGTTGAAGGCTTTAAGCAAGTGTTAGATAGGGATGCTTCCTCAATAAATGAAGTTGGGCTCTGGTATGAACGCCAAAATGGATCCAAAAAAGTTGTTCTTGAGCATAGAACTCCATTAATGGTTGCTGCTACCTATGGAAGTATCAGTGTTCTGAAGCTTATACTCTCATTTCCAGAGGTTGATGTAAATTTATCCTGTGGGACAGATAAGAGCACTGCCCTTCACTGTGCTGCTTCTGGAGGGTCTTTGAATGCAGTTGATGCTGTGAATCTTCTTTTATCAGCTGGCGCTGATCTTAATTCTAGGGATGCTAATGGAAATCGTCCTTTTGATGTTATTGTTGGTCCTCCTAAACAGCCAGGCATGCAAACAACTCTTGAGGAACTTCTTTCATATAATTCATCTGAAGGCTCTGTCAGTGACTCTATTGCAATATCCGTTAATTCATCCAGTCCTGATTCAGCTGCTCAATTATCATCCTCTGAAAATGGATTGCCATACTCTCCTTCAGGCTCACCATCTTCTCTAgctgcttcaaagtttactGATATGCCTGTTGGTTATACATctgagaagaaagaatatcCAATTGATCCATCACTTcctgatataaaaaatagcaTATATGCAACTGATGAGTTTCGTATGTTCTCATTTAAGGTCCGTCCTTGTTCCCGGGCATACTCTCATGACTGGACTGAGTGTCCTTTTGTTCATCCAGGAGAGAATGCTCGCAGGAGAGATCCCAGAAAGTTTCATTACAGCTGTGTGCCATGCCCTGACTTCCGCAAGGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAATGCTGGCTACACCCAGCTCAGTATCGGACACGGCTCTGCAAAGATGGTACGAGCTGCAATAGGAGGGTGTGTTTCTTTGCTCACACTGCTGAAGAGCTGCGTCCACTGTACGTGTCCACTGGATCAGCCGTCCCTTCACCACGTTCATCTGCCTCTGCTAATGTGATGGACATGGCTGCTGCTCTAAGCCTTTTGCCAGGGTCACCTTCATCAGTCTCCATGTCTCCATCCCCGTTTGCTCAGTCGATGTCTCCATCAGCTAGTGGCCTTTCACACTCGTCTGTGCCTTGGCCACAACCAAACGTCCCAGCCCTTCATCTACCTGGAAGCAACTTTCAATCTAGTCGCTTGAGATCTTCCCTTAGTGCTCGTGATATTCCCCCTGAACACTTGAATGTGTTGCCAGATTTTGATGGCCAGCAACACCTTTTGAATGACTTAAGCTGTTACTCGCAGCACCGGAACAGTCGATCCGGCCGATCCAAGACACTAACTCCATCAAATCTTGAAGAGCTATTTTCTGCTGAGATTTCTTCATCTCCCCGGTATTCTGACCCATCAGCCTCCTCTGTTTTTTCCCCTACACACAAATCTGCTGTCCTGAATCAGTTTCAGCAGTTTCAAACTATGTTATCTCCCATAAATACTAATGTCTTGTCCCCTAAGAACGTTGAACACTCTCTGGCACAAGCTTCATTTGATGTCTCTTCTCCTGGGAGGATGTCTCCGAGAAGTGTGGAGCCGATCTCTCCCATGAGTGCTCGTTCATCTGCCTTTGCTCAGCGCGAGAAGCATCAGCAACAGTTGCGCAGCCTCAGTTCAAGGGACCTGGGTTCCAACAATCCTGCCTCATTTGTAGGCTCCCCAGTAAACTCCTGGTCCCAGTTTGGATCTCCTAATGGAAAAGTTGACTGGGCAACCAACGGTGATGAACGAGGAAGATTGCCAAGATCATCTTCTTTTGAGCTTGGGAACAACGGAGAAGAACCCGATCTATCTTGGGTCCAATCCCTGGTCAAGGAATCTCCACCAGAGATGCTGAAAGAGAAGTTGGCTGGTAATGGACTCTCTTCCAATTCTCAAGTTGAAGCCATTGATCATTCTGTTATAGGAGCTTGGCTTGAGCAAATGCAGCTGGATCAGCTCATAgtcta 2066 0.4487 MNHLTVHTEDPFSSLLELASNNDVEGFKQVLDRDASSINEVGLWYERQNGSKKVVLEHRTPLMVAATYGSISVLKLILSFPEVDVNLSCGTDKSTALHCAASGGSLNAVDAVNLLLSAGADLNSRDANGNRPFDVIVGPPKQPGMQTTLEELLSYNSSEGSVSDSIAISVNSSSPDSAAQLSSSENGLPYSPSGSPSSLAASKFTDMPVGYTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASANVMDMAAALSLLPGSPSSVSMSPSPFAQSMSPSASGLSHSSVPWPQPNVPALHLPGSNFQSSRLRSSLSARDIPPEHLNVLPDFDGQQHLLNDLSCYSQHRNSRSGRSKTLTPSNLEELFSAEISSSPRYSDPSASSVFSPTHKSAVLNQFQQFQTMLSPINTNVLSPKNVEHSLAQASFDVSSPGRMSPRSVEPISPMSARSSAFAQREKHQQQLRSLSSRDLGSNNPASFVGSPVNSWSQFGSPNGKVDWATNGDERGRLPRSSSFELGNNGEEPDLSWVQSLVKESPPEMLKEKLAGNGLSSNSQVEAIDHSVIGAWLEQMQLDQLIV 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01289 688 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Bva09g01289 688 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bva09g01289 688 MobiDBLite consensus disorder prediction 174 201 - -
Bva09g01289 688 Pfam Ankyrin repeats (3 copies) 42 126 IPR002110 GO:0005515
Bva09g01289 688 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 686 - -
Bva09g01289 688 SUPERFAMILY Ankyrin repeat 9 135 IPR036770 -
Bva09g01289 688 MobiDBLite consensus disorder prediction 538 633 - -
Bva09g01289 688 ProSiteProfiles Zinc finger C3H1-type profile. 281 303 IPR000571 GO:0046872
Bva09g01289 688 SMART c3hfinal6 276 302 IPR000571 GO:0046872
Bva09g01289 688 SMART c3hfinal6 311 334 IPR000571 GO:0046872
Bva09g01289 688 MobiDBLite consensus disorder prediction 553 606 - -
Bva09g01289 688 PANTHER UNKEMPT FAMILY MEMBER 1 686 IPR045234 -
Bva09g01289 688 SMART ANK_2a 57 87 IPR002110 GO:0005515
Bva09g01289 688 SMART ANK_2a 92 124 IPR002110 GO:0005515
Bva09g01289 688 SMART ANK_2a 10 40 IPR002110 GO:0005515
Bva09g01289 688 Gene3D - 276 339 - -
Bva09g01289 688 MobiDBLite consensus disorder prediction 377 399 - -
Bva09g01289 688 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 301 IPR000571 GO:0046872
Bva09g01289 688 Gene3D - 9 160 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01289 Bva-Chr9 6984039 6987889 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva09g01289 Ank_2 2.9e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01282 07 13570464 13574461 Bva09g01289 09 6984039 6987889 ECH
Bva09g01289 09 6984039 6987889 Bva09g01289 09 6984039 6987889 ECH