Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01034 ATGGCTGCGGTTGCTGAGGTTTCCGTTGATGTAGCAGCTGCCATCAAGTTGGACTCTAAACCCAAATCCGATTCTGAATTCAATGTGCAGAAGCTCGTTGATATGTTCACAAAGTTGAATCCTTTGgcaaaagaattttttcctTCGACTTACTCTCATCATGATCATCCTTATCAGGACTATATTCAGTTCTCACCTAACAATTTTCCGGTCAGCAATAAGCCTTCAGCTAATGACAATTACCCAAACAACCGAAGGAGAAGAAACAGCTTTAGCCAGGGGAGAAGAAGGCTGAATGGAAGAGCTAATAAGGCTCAAAGAGAAGATAGTATACGAAGAACTGTATATGTTTCTGATATAGATCAGCATGTCACTGAGGAGCGGCTTGCTGCCTTATTTAGCAGTTGTGGACAAGTAATTGATTGCCGAATCTGTGGTGATCCACATTCAGTTCTTCGTTTTGCATTTGTGGAATTTGCAGATGAGCAAGGTGCAAGAACAGCTTTAAATCTTGGTGGAACTGTGCTTGGATACTATCCAGTCAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCAACATTCCTTCCTAGGTCGGATGATGAACGGGAAATGTGTACCAGGACTGTCTATTGTacaaatatagataaaaagGTTTCACAAGCTGAAGTGAAGAACTTCTTTGAAACAGCTTGTGGCGAGGTTACTCGTCTGAGGCTTTTAGGGGATCAAGTGCATTCAACCCGAATAGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTGAACTGTAGTGGGATGCTTTTGGGAAGCCAGCCTATCAGGGTAAGTCCTTCGAAGACACCCGTTAGACCTAGGGTCACGCGTCCAGCATCCATTTA 896 0.4219 MAAVAEVSVDVAAAIKLDSKPKSDSEFNVQKLVDMFTKLNPLAKEFFPSTYSHHDHPYQDYIQFSPNNFPVSNKPSANDNYPNNRRRRNSFSQGRRRLNGRANKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEQGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKVSQAEVKNFFETACGEVTRLRLLGDQVHSTRIAFVEFAMAESAIIALNCSGMLLGSQPIRVSPSKTPVRPRVTRPASI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01034 298 MobiDBLite consensus disorder prediction 72 88 - -
Bva09g01034 298 Gene3D - 70 189 IPR012677 -
Bva09g01034 298 Gene3D - 198 292 IPR012677 -
Bva09g01034 298 Pfam Ataxin-2 C-terminal region 35 49 IPR009818 -
Bva09g01034 298 MobiDBLite consensus disorder prediction 72 106 - -
Bva09g01034 298 CDD RRM1_CID8_like 111 190 IPR034823 -
Bva09g01034 298 SUPERFAMILY RNA-binding domain, RBD 200 292 IPR035979 GO:0003676
Bva09g01034 298 SUPERFAMILY RNA-binding domain, RBD 77 189 IPR035979 GO:0003676
Bva09g01034 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 188 IPR000504 GO:0003723
Bva09g01034 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Bva09g01034 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Bva09g01034 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 286 IPR000504 GO:0003723
Bva09g01034 298 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 296 - -
Bva09g01034 298 CDD RRM2_CID8_like 206 287 IPR034825 -
Bva09g01034 298 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 296 - -
Bva09g01034 298 SMART rrm1_1 114 184 IPR000504 GO:0003723
Bva09g01034 298 SMART rrm1_1 211 282 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01034 Bva-Chr9 5280595 5284947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01034 97 282 Eukaryotic Initiation Factors Gene Family AT1G34140 25.263 1.88e-12 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01034 09 5280595 5284947 Bva09g01034 09 5280595 5284947 ECH