LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva09g00916	ATGGATCCCACCAAGAAGCGTAAGATTGACGAAAACGGCGTTGTACCTGTCGATTCCGATCTCAAGCTTTCCCCTGCTGACGCGCGTAAAATTATCGAGCGTTTCAATCCTGAACAGCTCATCGATATCCTCCAGGATGCCATCGTTCGCCATGCAGATGTGCTCGACTCCGTCCGGTCAATTGCAGATCCTGATGTCGCTCAGCGTAAGTTGTTTATTCGTGGACTTGGGTGGGATACCACCACCGACGGCCTCCGCTCCCTTTTCTCATCCTACGGTGAGCTGGAAGAAGCTGTGGTGATTACCGATAAGGCCACTGGTAAATCCAGGGGCTATGGATTTGTCACTTTTAAGCATGTTGATGGTGCTTTGCTGGCTCTCAAGGAGCCTAGCAAGAGGATAGATGGTCGCGTCACTGTTACACAGCTTGCGGCAGCTGGAAATTCGGGTTCGAATACGAACGCGGTAGACATTGCGTTGAGGAAAATATACGTGGCTAATGTGCCGTCGGAGCTACCGGCCGATAAACTATTGGCTCACTTTTCGCTGTATGGAGAGATTGAAGAAGGACCTTTGGGGTTTGACAAGCAGACGGGTAAGTCAAAGGGGTTTGCTTTGTTTGTTTATAAGACAGCGGAGGGAGCACAAGCAGCACTAGTGGATCCGGTGAAGACTGTTGAGGGAAAGCAGCTGACTTGCAAGTTGGCGATAGATGGGAAGCAAGGGAAACGAGGAGGTGGTCCAATGGGAGATGGAATGCAGGGTCCTGGAAACTCTCATGTGGACGGGATGGGCATGGCTCCACCGTCTTCCGTACCGGGGTCATATACTGGTTCTGTTGGCTATGGTGGTTTTACCGGGGGACTTCCGGGTCAGCCACCTCTTGGTAATCATCCTCTGAATTCATCGTTGGGTGGTCCGGGATTGTCATCGGTTGGTAATCAGGCTCCCTCTTCGCTAGGTGGTACTGGCGGGTACGGTGGGCTTGGTGGTCCTTATGGCGGTTATGTTGGGACCGGGTCATCTGGTTTTGGTGGATTGGGCGGTAGTGGTGCCGCAGGCTTGGGCGGAGGTAGCGCTGCACTGGGTGGCGCTGGTTTGTATAGATTGCCGACTTCAGCTGGAATGCCCGCTGGTGGCTATCCAGAGAGTGGACATTACGGTTTGTCATCATCTGGGTACCCTAATCAGCATCACCAGCCTACTGGAGCGTCACCTTTACCTAGAGTTCCACCTGGCCCAATGTATCCAAATGTGCCTCCTTACTACTG	1271	0.5279	MDPTKKRKIDENGVVPVDSDLKLSPADARKIIERFNPEQLIDILQDAIVRHADVLDSVRSIADPDVAQRKLFIRGLGWDTTTDGLRSLFSSYGELEEAVVITDKATGKSRGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNSGSNTNAVDIALRKIYVANVPSELPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTAEGAQAALVDPVKTVEGKQLTCKLAIDGKQGKRGGGPMGDGMQGPGNSHVDGMGMAPPSSVPGSYTGSVGYGGFTGGLPGQPPLGNHPLNSSLGGPGLSSVGNQAPSSLGGTGGYGGLGGPYGGYVGTGSSGFGGLGGSGAAGLGGGSAALGGAGLYRLPTSAGMPAGGYPESGHYGLSSSGYPNQHHQPTGASPLPRVPPGPMYPNVPPYY	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva09g00916	423	MobiDBLite	consensus disorder prediction	405	423	-	-
	Bva09g00916	423	CDD	RRM_RBM24_RBM38_like	69	144	-	-
	Bva09g00916	423	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	163	220	IPR000504	GO:0003723
	Bva09g00916	423	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	71	138	IPR000504	GO:0003723
	Bva09g00916	423	Gene3D	-	56	156	IPR012677	-
	Bva09g00916	423	SMART	rrm1_1	70	142	IPR000504	GO:0003723
	Bva09g00916	423	SMART	rrm1_1	162	234	IPR000504	GO:0003723
	Bva09g00916	423	PANTHER	UBP1-ASSOCIATED PROTEIN 2C	1	391	-	-
	Bva09g00916	423	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	69	146	IPR000504	GO:0003723
	Bva09g00916	423	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	161	238	IPR000504	GO:0003723
	Bva09g00916	423	SUPERFAMILY	RNA-binding domain, RBD	60	144	IPR035979	GO:0003676
	Bva09g00916	423	PANTHER	GEO13361P1-RELATED	1	391	-	-
	Bva09g00916	423	MobiDBLite	consensus disorder prediction	386	423	-	-
	Bva09g00916	423	MobiDBLite	consensus disorder prediction	389	403	-	-
	Bva09g00916	423	Gene3D	-	157	267	IPR012677	-
	Bva09g00916	423	SUPERFAMILY	RNA-binding domain, RBD	154	260	IPR035979	GO:0003676
	Bva09g00916	423	MobiDBLite	consensus disorder prediction	287	317	-	-
	Bva09g00916	423	CDD	RRM_RBM24_RBM38_like	161	236	-	-
	Bva09g00916	423	MobiDBLite	consensus disorder prediction	296	317	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva09g00916	Bva-Chr9	4728050	4732560	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva09g00916	157	274	C2H2 Transcription Factor Family	AT2G19380	34.167	4.08e-11	63.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva09g00916	09	4728050	4732560	Bva07g01678	07	15830534	15835293	ECH
	Bva09g00916	09	4728050	4732560	Bva09g00916	09	4728050	4732560	ECH