Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01948 ATGGAAGGGGTAGCTCCAAGGCCAGTGATAGAGAAGAACGCCAGGCCACAGGAGCAATTGAATTGTCCAAGGTGCAATTCAACCAACACAAAGTTCTGTTACTACAACAACTACAGCCTCACACAACCTAGATACTTCTGCAAAACTTGCAGAAGGTATTGGACAGAAGGAGGCTCTCTCAGAAATGTCCCTGTTGGTGGAGGTTcaagaaagaacaagaaggTTACTCCAGCATCATCAGCAGCAGCTTCATCAAAGGTTCCTGATCTTAACCCACCAAGCATCTCAACCATTTCTtcccaaaaccctaaaatgCATGGAGGGCAAGATCTTAATCTGGCTTTCCCAGCTATGGAGAAGTTCCATGGTCTGTCTCAGTATGTTGAGATGCCAAAACTTGAAAATGGTGATTCTAGTCACCAAAGCCCTTCTGCTCCAACTTCACTTTCAGCTCTCGAGCTACTAAGGAGTGGGATGGCTTCTAGGGGTTTGAATCCTTATGCTCCTTCATTGATGCCAAACTCAAATACCCTTTATCCATCTGGGTATCCTATGCAAGAAATTAAACCTAATCTTGGTTTTTCAGTTGATCATGGACTTGGAAACAGATTTGGGGTGCAAGAGAACAGTGGGAGGCTTTTGTTCCCTTATGGAGATCATATGAAGCAACTTTCAGGTAATACTGAAGTGGAACAAAGTAAAGAACAAGGAAATTCTACTGGGTATTGGACTGGGATGATTGGCGAAGGATCTTGGTG 758 0.4208 MEGVAPRPVIEKNARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTPASSAAASSKVPDLNPPSISTISSQNPKMHGGQDLNLAFPAMEKFHGLSQYVEMPKLENGDSSHQSPSAPTSLSALELLRSGMASRGLNPYAPSLMPNSNTLYPSGYPMQEIKPNLGFSVDHGLGNRFGVQENSGRLLFPYGDHMKQLSGNTEVEQSKEQGNSTGYWTGMIGEGSW 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01948 252 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Bva08g01948 252 MobiDBLite consensus disorder prediction 73 107 - -
Bva08g01948 252 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Bva08g01948 252 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 10 247 - -
Bva08g01948 252 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 247 IPR045174 GO:0003700|GO:0006355
Bva08g01948 252 MobiDBLite consensus disorder prediction 61 110 - -
Bva08g01948 252 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01948 Bva-Chr8 13078505 13080418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01948 12 252 C2C2-Dof Transcription Factor Family AT3G61850 51.311 1.09e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva08g01948 zf-Dof 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01948 - - gmx:778110 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01948 08 13078505 13080418 Bva12g01922 12 15335757 15337921 ECH
Bva08g01948 08 13078505 13080418 Bva06g02999 06 18670090 18672292 ECH
Bva08g01948 08 13078505 13080418 Bva08g01948 08 13078505 13080418 ECH
Bva02g02069 02 21493772 21496180 Bva08g01948 08 13078505 13080418 ECH