Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01652 ATGGGAAGAGGAAAGATTGAGATCAAGAGGATTCACAACAACACGACCAGGCAAGTCACCTTCTCCAAACGCCGTGCTGGTCTTATCAAGAAGACTCATGAGCTCTCTGTGCTCTGTGATGCCCAAATTGGCCTCATCGTCTTCTCTAGCACAGGGAAGATTTTTCAGTACTGCAGTGAACCCTTGAGGATGGACCAAATTATCGAAAGGTACCTGAGAGCTACAGGAGCACGTATACCAGATCAACGTGACAACAATgaaGATTTATTCGGTGAAATGGCAATATTGAGAGAGGAAACTCGTCGTCTTGAACGGGCAATTCAACAGTATCTTGGAGAAAACATGAGCTCTTTACATTATGAAGATCTGATTAAGCTTGAAGAAGAATTGGAGAACTCTGCTAACAAAGTCCGAAATCGAAAGTATGAACTATTGCAACAGCAGCTGGATAACCTACGAAGGAAGGAAAGAATTGTGGAAGAGGAAAACAACAATCTGTCCCATTGGATTAAGGAACACCGTGCGGTGTTGGAGTATCAGAAGGCTGCAGCATATCAAGGAAAACAATCAGATCAGCATCAGCAAATGATTGATCATTTCCCATTATTTGAAGATCAATCTGTTGGTAGCATCCTTCAACTAGCCCCTGTTCCTCCTCACATTCACCCTTATCTCCAGCTAGCACAGCCCAACATTCAAGACTCACTCTCTGCTCGAGATCCTCCACAatgTTCATCATTGCATGAGATTGCAGAGCTAATGGATTCAGCTCCTATTCTATG 782 0.4322 MGRGKIEIKRIHNNTTRQVTFSKRRAGLIKKTHELSVLCDAQIGLIVFSSTGKIFQYCSEPLRMDQIIERYLRATGARIPDQRDNNEDLFGEMAILREETRRLERAIQQYLGENMSSLHYEDLIKLEEELENSANKVRNRKYELLQQQLDNLRRKERIVEEENNNLSHWIKEHRAVLEYQKAAAYQGKQSDQHQQMIDHFPLFEDQSVGSILQLAPVPPHIHPYLQLAQPNIQDSLSARDPPQCSSLHEIAELMDSAPIL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01652 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva08g01652 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva08g01652 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva08g01652 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva08g01652 260 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva08g01652 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Bva08g01652 260 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bva08g01652 260 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Bva08g01652 260 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva08g01652 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva08g01652 260 Coils Coil 86 113 - -
Bva08g01652 260 Coils Coil 120 172 - -
Bva08g01652 260 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Bva08g01652 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva08g01652 260 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 233 - -
Bva08g01652 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01652 Bva-Chr8 8912836 8916395 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva08g01652 K-box 2e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01652 08 8912836 8916395 Bva08g01652 08 8912836 8916395 ECH